Gene : Bradi1g30180 B. distachyon v3.1
Defline:  (1 of 1) PTHR11079:SF73 - RNA PSEUDOURIDINE SYNTHASE 2, CHLOROPLASTIC Genomic Order:  3821
Name:  ? Bradi1g30180 Secondary Identifier:  ? PAC:32794315
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g30180 0.5kb upstream 0.5kb upstream 4253 true Bd1: 25594639-25598891 Brachypodium distachyon
Bradi1g30180 0.5kb upstream 0.5kb upstream 500 false Bd1: 25598392-25598891 Brachypodium distachyon
Bradi1g30180 0.5kb downstream 0.5kb downstream 4253 true Bd1: 25594139-25598391 Brachypodium distachyon
Bradi1g30180 0.5kb downstream 0.5kb downstream 500 false Bd1: 25594139-25594638 Brachypodium distachyon
Bradi1g30180 1.0kb upstream 1.0kb upstream 4753 true Bd1: 25594639-25599391 Brachypodium distachyon
Bradi1g30180 1.0kb upstream 1.0kb upstream 1000 false Bd1: 25598392-25599391 Brachypodium distachyon
Bradi1g30180 1.0kb downstream 1.0kb downstream 4753 true Bd1: 25593639-25598391 Brachypodium distachyon
Bradi1g30180 1.0kb downstream 1.0kb downstream 1000 false Bd1: 25593639-25594638 Brachypodium distachyon
Bradi1g30180 2.0kb upstream 2.0kb upstream 5753 true Bd1: 25594639-25600391 Brachypodium distachyon
Bradi1g30180 2.0kb upstream 2.0kb upstream 2000 false Bd1: 25598392-25600391 Brachypodium distachyon
Bradi1g30180 2.0kb downstream 2.0kb downstream 5753 true Bd1: 25592639-25598391 Brachypodium distachyon
Bradi1g30180 2.0kb downstream 2.0kb downstream 2000 false Bd1: 25592639-25594638 Brachypodium distachyon
Bradi1g30180 5.0kb upstream 5.0kb upstream 8753 true Bd1: 25594639-25603391 Brachypodium distachyon
Bradi1g30180 5.0kb upstream 5.0kb upstream 5000 false Bd1: 25598392-25603391 Brachypodium distachyon
Bradi1g30180 5.0kb downstream 5.0kb downstream 8753 true Bd1: 25589639-25598391 Brachypodium distachyon
Bradi1g30180 5.0kb downstream 5.0kb downstream 5000 false Bd1: 25589639-25594638 Brachypodium distachyon
Bradi1g30180 10.0kb upstream 10.0kb upstream 13753 true Bd1: 25594639-25608391 Brachypodium distachyon
Bradi1g30180 10.0kb upstream 10.0kb upstream 10000 false Bd1: 25598392-25608391 Brachypodium distachyon
Bradi1g30180 10.0kb downstream 10.0kb downstream 13753 true Bd1: 25584639-25598391 Brachypodium distachyon
Bradi1g30180 10.0kb downstream 10.0kb downstream 10000 false Bd1: 25584639-25594638 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124572394 5269 Grass View MSA
122047561 5273 Angiosperm View MSA
121344474 5274 Embryophyte View MSA
123426669 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.323        
cufflinks 2.131        
cufflinks 2.044        
cufflinks 2.297       High
cufflinks 0.626       Low
cufflinks 1.798        
cufflinks 1.63        
cufflinks 1.11        
cufflinks 1.377        
cufflinks 2.037        
cufflinks 1.585        
cufflinks 1.214        
cufflinks 0.955        
cufflinks 1.355        
cufflinks 1.082        
cufflinks 1.772        
cufflinks 1.301        
cufflinks 0.359       Low
cufflinks 0.737        
cufflinks 0.189       Low
cufflinks 0.807        
cufflinks 1.702        
cufflinks 1.027        
cufflinks 1.381        
cufflinks 1.853        
cufflinks 2.129        
cufflinks 0.843        
cufflinks 2.146       High
cufflinks 1.901        
cufflinks 1.274        

0 Strain