Gene : Bradi1g30648 B. distachyon v3.1
Defline:  (1 of 1) PTHR13900:SF0 - TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 1-RELATED Genomic Order:  3880
Name:  ? Bradi1g30648 Secondary Identifier:  ? PAC:32795256
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g30648 0.5kb upstream 0.5kb upstream 14683 true Bd1: 25977943-25992625 Brachypodium distachyon
Bradi1g30648 0.5kb upstream 0.5kb upstream 500 false Bd1: 25992126-25992625 Brachypodium distachyon
Bradi1g30648 0.5kb downstream 0.5kb downstream 14683 true Bd1: 25977443-25992125 Brachypodium distachyon
Bradi1g30648 0.5kb downstream 0.5kb downstream 500 false Bd1: 25977443-25977942 Brachypodium distachyon
Bradi1g30648 1.0kb upstream 1.0kb upstream 15183 true Bd1: 25977943-25993125 Brachypodium distachyon
Bradi1g30648 1.0kb upstream 1.0kb upstream 1000 false Bd1: 25992126-25993125 Brachypodium distachyon
Bradi1g30648 1.0kb downstream 1.0kb downstream 15183 true Bd1: 25976943-25992125 Brachypodium distachyon
Bradi1g30648 1.0kb downstream 1.0kb downstream 1000 false Bd1: 25976943-25977942 Brachypodium distachyon
Bradi1g30648 2.0kb upstream 2.0kb upstream 16183 true Bd1: 25977943-25994125 Brachypodium distachyon
Bradi1g30648 2.0kb upstream 2.0kb upstream 2000 false Bd1: 25992126-25994125 Brachypodium distachyon
Bradi1g30648 2.0kb downstream 2.0kb downstream 16183 true Bd1: 25975943-25992125 Brachypodium distachyon
Bradi1g30648 2.0kb downstream 2.0kb downstream 2000 false Bd1: 25975943-25977942 Brachypodium distachyon
Bradi1g30648 5.0kb upstream 5.0kb upstream 19183 true Bd1: 25977943-25997125 Brachypodium distachyon
Bradi1g30648 5.0kb upstream 5.0kb upstream 5000 false Bd1: 25992126-25997125 Brachypodium distachyon
Bradi1g30648 5.0kb downstream 5.0kb downstream 19183 true Bd1: 25972943-25992125 Brachypodium distachyon
Bradi1g30648 5.0kb downstream 5.0kb downstream 5000 false Bd1: 25972943-25977942 Brachypodium distachyon
Bradi1g30648 10.0kb upstream 10.0kb upstream 24183 true Bd1: 25977943-26002125 Brachypodium distachyon
Bradi1g30648 10.0kb upstream 10.0kb upstream 10000 false Bd1: 25992126-26002125 Brachypodium distachyon
Bradi1g30648 10.0kb downstream 10.0kb downstream 24183 true Bd1: 25967943-25992125 Brachypodium distachyon
Bradi1g30648 10.0kb downstream 10.0kb downstream 10000 false Bd1: 25967943-25977942 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124574447 5269 Grass View MSA
122046359 5273 Angiosperm View MSA
121347140 5274 Embryophyte View MSA
123423919 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.896        
cufflinks 5.495        
cufflinks 7.218       High
cufflinks 3.337        
cufflinks 1.438       Low
cufflinks 5.035        
cufflinks 4.49        
cufflinks 4.121        
cufflinks 4.982        
cufflinks 3.363        
cufflinks 6.633        
cufflinks 5.696        
cufflinks 5.516        
cufflinks 4.074        
cufflinks 2.869        
cufflinks 5.274        
cufflinks 1.628       Low
cufflinks 5.545        
cufflinks 2.277        
cufflinks 1.432       Low
cufflinks 2.253        
cufflinks 8.509       High
cufflinks 4.167        
cufflinks 4.055        
cufflinks 3.565        
cufflinks 6.006        
cufflinks 6.368        
cufflinks 6.434        
cufflinks 6.589        
cufflinks 5.103        

0 Strain