Gene : Bradi1g30610 B. distachyon v3.1
Defline:  (1 of 1) PTHR11946:SF73 - ISOLEUCINE--TRNA LIGASE, CYTOPLASMIC Genomic Order:  3876
Name:  ? Bradi1g30610 Secondary Identifier:  ? PAC:32804549
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon TRNA-CHARGING-PWY Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g30610 0.5kb upstream 0.5kb upstream 14533 true Bd1: 25948699-25963231 Brachypodium distachyon
Bradi1g30610 0.5kb upstream 0.5kb upstream 500 false Bd1: 25948699-25949198 Brachypodium distachyon
Bradi1g30610 0.5kb downstream 0.5kb downstream 14533 true Bd1: 25949199-25963731 Brachypodium distachyon
Bradi1g30610 0.5kb downstream 0.5kb downstream 500 false Bd1: 25963232-25963731 Brachypodium distachyon
Bradi1g30610 1.0kb upstream 1.0kb upstream 15033 true Bd1: 25948199-25963231 Brachypodium distachyon
Bradi1g30610 1.0kb upstream 1.0kb upstream 1000 false Bd1: 25948199-25949198 Brachypodium distachyon
Bradi1g30610 1.0kb downstream 1.0kb downstream 15033 true Bd1: 25949199-25964231 Brachypodium distachyon
Bradi1g30610 1.0kb downstream 1.0kb downstream 1000 false Bd1: 25963232-25964231 Brachypodium distachyon
Bradi1g30610 2.0kb upstream 2.0kb upstream 16033 true Bd1: 25947199-25963231 Brachypodium distachyon
Bradi1g30610 2.0kb upstream 2.0kb upstream 2000 false Bd1: 25947199-25949198 Brachypodium distachyon
Bradi1g30610 2.0kb downstream 2.0kb downstream 16033 true Bd1: 25949199-25965231 Brachypodium distachyon
Bradi1g30610 2.0kb downstream 2.0kb downstream 2000 false Bd1: 25963232-25965231 Brachypodium distachyon
Bradi1g30610 5.0kb upstream 5.0kb upstream 19033 true Bd1: 25944199-25963231 Brachypodium distachyon
Bradi1g30610 5.0kb upstream 5.0kb upstream 5000 false Bd1: 25944199-25949198 Brachypodium distachyon
Bradi1g30610 5.0kb downstream 5.0kb downstream 19033 true Bd1: 25949199-25968231 Brachypodium distachyon
Bradi1g30610 5.0kb downstream 5.0kb downstream 5000 false Bd1: 25963232-25968231 Brachypodium distachyon
Bradi1g30610 10.0kb upstream 10.0kb upstream 24033 true Bd1: 25939199-25963231 Brachypodium distachyon
Bradi1g30610 10.0kb upstream 10.0kb upstream 10000 false Bd1: 25939199-25949198 Brachypodium distachyon
Bradi1g30610 10.0kb downstream 10.0kb downstream 24033 true Bd1: 25949199-25973231 Brachypodium distachyon
Bradi1g30610 10.0kb downstream 10.0kb downstream 10000 false Bd1: 25963232-25973231 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041086 5273 Angiosperm View MSA
124571165 5269 Grass View MSA
121346625 5274 Embryophyte View MSA
123428554 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.209        
cufflinks 7.114       High
cufflinks 6.68        
cufflinks 5.329        
cufflinks 1.39       Low
cufflinks 5.98        
cufflinks 5.712        
cufflinks 3.865        
cufflinks 5.369        
cufflinks 2.655        
cufflinks 4.05        
cufflinks 4.589        
cufflinks 2.039        
cufflinks 2.427        
cufflinks 1.64       Low
cufflinks 6.237        
cufflinks 2.9        
cufflinks 8.788       High
cufflinks 2.29        
cufflinks 0.698       Low
cufflinks 2.952        
cufflinks 4.898        
cufflinks 3.652        
cufflinks 4.328        
cufflinks 4.961        
cufflinks 4.797        
cufflinks 3.016        
cufflinks 4.053        
cufflinks 4.005        
cufflinks 5.179        

0 Strain