Gene : Bradi5g25166 B. distachyon v3.1
Defline:  (1 of 6) 2.3.1.64 - Agmatine N(4)-coumaroyltransferase / p-coumaroyl-CoA-agmatine N-p-coumaroyltransferase Genomic Order:  2992
Name:  ? Bradi5g25166 Secondary Identifier:  ? PAC:32811892
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi5g25166 0.5kb upstream 0.5kb upstream 2307 true Bd5: 26790009-26792315 Brachypodium distachyon
Bradi5g25166 0.5kb upstream 0.5kb upstream 500 false Bd5: 26790009-26790508 Brachypodium distachyon
Bradi5g25166 0.5kb downstream 0.5kb downstream 2307 true Bd5: 26790509-26792815 Brachypodium distachyon
Bradi5g25166 0.5kb downstream 0.5kb downstream 500 false Bd5: 26792316-26792815 Brachypodium distachyon
Bradi5g25166 1.0kb upstream 1.0kb upstream 2807 true Bd5: 26789509-26792315 Brachypodium distachyon
Bradi5g25166 1.0kb upstream 1.0kb upstream 1000 false Bd5: 26789509-26790508 Brachypodium distachyon
Bradi5g25166 1.0kb downstream 1.0kb downstream 2807 true Bd5: 26790509-26793315 Brachypodium distachyon
Bradi5g25166 1.0kb downstream 1.0kb downstream 1000 false Bd5: 26792316-26793315 Brachypodium distachyon
Bradi5g25166 2.0kb upstream 2.0kb upstream 3807 true Bd5: 26788509-26792315 Brachypodium distachyon
Bradi5g25166 2.0kb upstream 2.0kb upstream 2000 false Bd5: 26788509-26790508 Brachypodium distachyon
Bradi5g25166 2.0kb downstream 2.0kb downstream 3807 true Bd5: 26790509-26794315 Brachypodium distachyon
Bradi5g25166 2.0kb downstream 2.0kb downstream 2000 false Bd5: 26792316-26794315 Brachypodium distachyon
Bradi5g25166 5.0kb upstream 5.0kb upstream 6807 true Bd5: 26785509-26792315 Brachypodium distachyon
Bradi5g25166 5.0kb upstream 5.0kb upstream 5000 false Bd5: 26785509-26790508 Brachypodium distachyon
Bradi5g25166 5.0kb downstream 5.0kb downstream 6807 true Bd5: 26790509-26797315 Brachypodium distachyon
Bradi5g25166 5.0kb downstream 5.0kb downstream 5000 false Bd5: 26792316-26797315 Brachypodium distachyon
Bradi5g25166 10.0kb upstream 10.0kb upstream 11807 true Bd5: 26780509-26792315 Brachypodium distachyon
Bradi5g25166 10.0kb upstream 10.0kb upstream 10000 false Bd5: 26780509-26790508 Brachypodium distachyon
Bradi5g25166 10.0kb downstream 10.0kb downstream 11807 true Bd5: 26790509-26802315 Brachypodium distachyon
Bradi5g25166 10.0kb downstream 10.0kb downstream 10000 false Bd5: 26792316-26802315 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124586548 5269 Grass View MSA
122051149 5273 Angiosperm View MSA
121350983 5274 Embryophyte View MSA
123428782 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.008     Low Low
cufflinks 0.013     Low  
cufflinks 0.011     Low  
cufflinks 0.009     Low Low
cufflinks 0.03     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.009     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.054     Low High
cufflinks 0.037     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.01     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.009     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.042     Low High
cufflinks 0.026     Low  
cufflinks 0.031     Low  
cufflinks 0.029     Low  

0 Strain