Gene : Bradi5g23220 B. distachyon v3.1
Defline:  (1 of 2) K12626 - U6 snRNA-associated Sm-like protein LSm7 (LSM7) Genomic Order:  2727
Name:  ? Bradi5g23220 Secondary Identifier:  ? PAC:32808148
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi5g23220 0.5kb upstream 0.5kb upstream 2608 true Bd5: 25399584-25402191 Brachypodium distachyon
Bradi5g23220 0.5kb upstream 0.5kb upstream 500 false Bd5: 25401692-25402191 Brachypodium distachyon
Bradi5g23220 0.5kb downstream 0.5kb downstream 2608 true Bd5: 25399084-25401691 Brachypodium distachyon
Bradi5g23220 0.5kb downstream 0.5kb downstream 500 false Bd5: 25399084-25399583 Brachypodium distachyon
Bradi5g23220 1.0kb upstream 1.0kb upstream 3108 true Bd5: 25399584-25402691 Brachypodium distachyon
Bradi5g23220 1.0kb upstream 1.0kb upstream 1000 false Bd5: 25401692-25402691 Brachypodium distachyon
Bradi5g23220 1.0kb downstream 1.0kb downstream 3108 true Bd5: 25398584-25401691 Brachypodium distachyon
Bradi5g23220 1.0kb downstream 1.0kb downstream 1000 false Bd5: 25398584-25399583 Brachypodium distachyon
Bradi5g23220 2.0kb upstream 2.0kb upstream 4108 true Bd5: 25399584-25403691 Brachypodium distachyon
Bradi5g23220 2.0kb upstream 2.0kb upstream 2000 false Bd5: 25401692-25403691 Brachypodium distachyon
Bradi5g23220 2.0kb downstream 2.0kb downstream 4108 true Bd5: 25397584-25401691 Brachypodium distachyon
Bradi5g23220 2.0kb downstream 2.0kb downstream 2000 false Bd5: 25397584-25399583 Brachypodium distachyon
Bradi5g23220 5.0kb upstream 5.0kb upstream 7108 true Bd5: 25399584-25406691 Brachypodium distachyon
Bradi5g23220 5.0kb upstream 5.0kb upstream 5000 false Bd5: 25401692-25406691 Brachypodium distachyon
Bradi5g23220 5.0kb downstream 5.0kb downstream 7108 true Bd5: 25394584-25401691 Brachypodium distachyon
Bradi5g23220 5.0kb downstream 5.0kb downstream 5000 false Bd5: 25394584-25399583 Brachypodium distachyon
Bradi5g23220 10.0kb upstream 10.0kb upstream 12108 true Bd5: 25399584-25411691 Brachypodium distachyon
Bradi5g23220 10.0kb upstream 10.0kb upstream 10000 false Bd5: 25401692-25411691 Brachypodium distachyon
Bradi5g23220 10.0kb downstream 10.0kb downstream 12108 true Bd5: 25389584-25401691 Brachypodium distachyon
Bradi5g23220 10.0kb downstream 10.0kb downstream 10000 false Bd5: 25389584-25399583 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124569098 5269 Grass View MSA
122051368 5273 Angiosperm View MSA
121349484 5274 Embryophyte View MSA
123423999 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 33.563     High  
cufflinks 28.327     High  
cufflinks 25.611     High  
cufflinks 40.526     High  
cufflinks 30.708     High  
cufflinks 26.102     High  
cufflinks 26.654     High  
cufflinks 23.682     High  
cufflinks 25.965     High  
cufflinks 41.851     High High
cufflinks 11.462     High Low
cufflinks 22.861     High  
cufflinks 10.511     High Low
cufflinks 12.531     High Low
cufflinks 21.54     High  
cufflinks 25.283     High  
cufflinks 40.999     High  
cufflinks 35.818     High  
cufflinks 30.557     High  
cufflinks 47.497     High High
cufflinks 50.561     High High
cufflinks 22.162     High  
cufflinks 22.06     High  
cufflinks 22.665     High  
cufflinks 31.526     High  
cufflinks 41.701     High  
cufflinks 11.998     High Low
cufflinks 34.72     High  
cufflinks 27.158     High  
cufflinks 39.514     High  

0 Strain