Gene : Bradi5g26360 B. distachyon v3.1
Defline:  (1 of 3) PTHR13152 - TFIIH, POLYPEPTIDE 4 Genomic Order:  3138
Name:  ? Bradi5g26360 Secondary Identifier:  ? PAC:32808183
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi5g26360 0.5kb upstream 0.5kb upstream 7565 true Bd5: 27564607-27572171 Brachypodium distachyon
Bradi5g26360 0.5kb upstream 0.5kb upstream 500 false Bd5: 27564607-27565106 Brachypodium distachyon
Bradi5g26360 0.5kb downstream 0.5kb downstream 7565 true Bd5: 27565107-27572671 Brachypodium distachyon
Bradi5g26360 0.5kb downstream 0.5kb downstream 500 false Bd5: 27572172-27572671 Brachypodium distachyon
Bradi5g26360 1.0kb upstream 1.0kb upstream 8065 true Bd5: 27564107-27572171 Brachypodium distachyon
Bradi5g26360 1.0kb upstream 1.0kb upstream 1000 false Bd5: 27564107-27565106 Brachypodium distachyon
Bradi5g26360 1.0kb downstream 1.0kb downstream 8065 true Bd5: 27565107-27573171 Brachypodium distachyon
Bradi5g26360 1.0kb downstream 1.0kb downstream 1000 false Bd5: 27572172-27573171 Brachypodium distachyon
Bradi5g26360 2.0kb upstream 2.0kb upstream 9065 true Bd5: 27563107-27572171 Brachypodium distachyon
Bradi5g26360 2.0kb upstream 2.0kb upstream 2000 false Bd5: 27563107-27565106 Brachypodium distachyon
Bradi5g26360 2.0kb downstream 2.0kb downstream 9065 true Bd5: 27565107-27574171 Brachypodium distachyon
Bradi5g26360 2.0kb downstream 2.0kb downstream 2000 false Bd5: 27572172-27574171 Brachypodium distachyon
Bradi5g26360 5.0kb upstream 5.0kb upstream 12065 true Bd5: 27560107-27572171 Brachypodium distachyon
Bradi5g26360 5.0kb upstream 5.0kb upstream 5000 false Bd5: 27560107-27565106 Brachypodium distachyon
Bradi5g26360 5.0kb downstream 5.0kb downstream 12065 true Bd5: 27565107-27577171 Brachypodium distachyon
Bradi5g26360 5.0kb downstream 5.0kb downstream 5000 false Bd5: 27572172-27577171 Brachypodium distachyon
Bradi5g26360 10.0kb upstream 10.0kb upstream 17065 true Bd5: 27555107-27572171 Brachypodium distachyon
Bradi5g26360 10.0kb upstream 10.0kb upstream 10000 false Bd5: 27555107-27565106 Brachypodium distachyon
Bradi5g26360 10.0kb downstream 10.0kb downstream 17065 true Bd5: 27565107-27582171 Brachypodium distachyon
Bradi5g26360 10.0kb downstream 10.0kb downstream 10000 false Bd5: 27572172-27582171 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124579755 5269 Grass View MSA
122042198 5273 Angiosperm View MSA
121346770 5274 Embryophyte View MSA
123427579 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.271        
cufflinks 0.4        
cufflinks 0.442        
cufflinks 0.353        
cufflinks 0.182       Low
cufflinks 0.367        
cufflinks 0.343        
cufflinks 0.315        
cufflinks 0.386        
cufflinks 0.421        
cufflinks 0.461        
cufflinks 0.345        
cufflinks 0.338        
cufflinks 0.356        
cufflinks 0.222       Low
cufflinks 0.426        
cufflinks 0.337        
cufflinks 0.565       High
cufflinks 0.422        
cufflinks 0.107     Low Low
cufflinks 0.413        
cufflinks 0.527       High
cufflinks 0.321        
cufflinks 0.315        
cufflinks 0.334        
cufflinks 0.429        
cufflinks 0.425        
cufflinks 0.462        
cufflinks 0.44        
cufflinks 0.321        

0 Strain