Gene : Bradi5g27530 B. distachyon v3.1
Defline:  (1 of 1) PTHR10024:SF197 - C2 CALCIUM/LIPID-BINDING PLANT PHOSPHORIBOSYLTRANSFERASE FAMILY PROTEIN Genomic Order:  3295
Name:  ? Bradi5g27530 Secondary Identifier:  ? PAC:32811808
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi5g27530 0.5kb upstream 0.5kb upstream 4123 true Bd5: 28446140-28450262 Brachypodium distachyon
Bradi5g27530 0.5kb upstream 0.5kb upstream 500 false Bd5: 28446140-28446639 Brachypodium distachyon
Bradi5g27530 0.5kb downstream 0.5kb downstream 4123 true Bd5: 28446640-28450762 Brachypodium distachyon
Bradi5g27530 0.5kb downstream 0.5kb downstream 500 false Bd5: 28450263-28450762 Brachypodium distachyon
Bradi5g27530 1.0kb upstream 1.0kb upstream 4623 true Bd5: 28445640-28450262 Brachypodium distachyon
Bradi5g27530 1.0kb upstream 1.0kb upstream 1000 false Bd5: 28445640-28446639 Brachypodium distachyon
Bradi5g27530 1.0kb downstream 1.0kb downstream 4623 true Bd5: 28446640-28451262 Brachypodium distachyon
Bradi5g27530 1.0kb downstream 1.0kb downstream 1000 false Bd5: 28450263-28451262 Brachypodium distachyon
Bradi5g27530 2.0kb upstream 2.0kb upstream 5623 true Bd5: 28444640-28450262 Brachypodium distachyon
Bradi5g27530 2.0kb upstream 2.0kb upstream 2000 false Bd5: 28444640-28446639 Brachypodium distachyon
Bradi5g27530 2.0kb downstream 2.0kb downstream 5623 true Bd5: 28446640-28452262 Brachypodium distachyon
Bradi5g27530 2.0kb downstream 2.0kb downstream 2000 false Bd5: 28450263-28452262 Brachypodium distachyon
Bradi5g27530 5.0kb upstream 5.0kb upstream 8623 true Bd5: 28441640-28450262 Brachypodium distachyon
Bradi5g27530 5.0kb upstream 5.0kb upstream 5000 false Bd5: 28441640-28446639 Brachypodium distachyon
Bradi5g27530 5.0kb downstream 5.0kb downstream 8623 true Bd5: 28446640-28455262 Brachypodium distachyon
Bradi5g27530 5.0kb downstream 5.0kb downstream 5000 false Bd5: 28450263-28455262 Brachypodium distachyon
Bradi5g27530 10.0kb upstream 10.0kb upstream 13623 true Bd5: 28436640-28450262 Brachypodium distachyon
Bradi5g27530 10.0kb upstream 10.0kb upstream 10000 false Bd5: 28436640-28446639 Brachypodium distachyon
Bradi5g27530 10.0kb downstream 10.0kb downstream 13623 true Bd5: 28446640-28460262 Brachypodium distachyon
Bradi5g27530 10.0kb downstream 10.0kb downstream 10000 false Bd5: 28450263-28460262 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026435 5273 Angiosperm View MSA
124570731 5269 Grass View MSA
121350979 5274 Embryophyte View MSA
123427289 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.852     High  
cufflinks 14.143     High  
cufflinks 16.877     High  
cufflinks 13.186     High  
cufflinks 12.047     High  
cufflinks 15.099     High  
cufflinks 16.554     High  
cufflinks 17.344     High  
cufflinks 16.817     High  
cufflinks 13.372     High  
cufflinks 1.905       Low
cufflinks 12.944     High  
cufflinks 9.204     High  
cufflinks 2.976       Low
cufflinks 20.048     High High
cufflinks 9.375        
cufflinks 17.418     High  
cufflinks 2.411       Low
cufflinks 15.124     High  
cufflinks 2.612       Low
cufflinks 7.017        
cufflinks 15.924     High  
cufflinks 23.039     High High
cufflinks 19.894     High High
cufflinks 13.013     High  
cufflinks 13.338     High  
cufflinks 6.35        
cufflinks 13.7     High  
cufflinks 14.454     High  
cufflinks 26.972     High High

0 Strain