Gene : Bradi1g43607 B. distachyon v3.1
Defline:  (1 of 1) PTHR11390:SF27 - DNA TOPOISOMERASE Genomic Order:  5365
Name:  ? Bradi1g43607 Secondary Identifier:  ? PAC:32804247
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g43607 0.5kb upstream 0.5kb upstream 20626 true Bd1: 41557428-41578053 Brachypodium distachyon
Bradi1g43607 0.5kb upstream 0.5kb upstream 500 false Bd1: 41557428-41557927 Brachypodium distachyon
Bradi1g43607 0.5kb downstream 0.5kb downstream 20626 true Bd1: 41557928-41578553 Brachypodium distachyon
Bradi1g43607 0.5kb downstream 0.5kb downstream 500 false Bd1: 41578054-41578553 Brachypodium distachyon
Bradi1g43607 1.0kb upstream 1.0kb upstream 21126 true Bd1: 41556928-41578053 Brachypodium distachyon
Bradi1g43607 1.0kb upstream 1.0kb upstream 1000 false Bd1: 41556928-41557927 Brachypodium distachyon
Bradi1g43607 1.0kb downstream 1.0kb downstream 21126 true Bd1: 41557928-41579053 Brachypodium distachyon
Bradi1g43607 1.0kb downstream 1.0kb downstream 1000 false Bd1: 41578054-41579053 Brachypodium distachyon
Bradi1g43607 2.0kb upstream 2.0kb upstream 22126 true Bd1: 41555928-41578053 Brachypodium distachyon
Bradi1g43607 2.0kb upstream 2.0kb upstream 2000 false Bd1: 41555928-41557927 Brachypodium distachyon
Bradi1g43607 2.0kb downstream 2.0kb downstream 22126 true Bd1: 41557928-41580053 Brachypodium distachyon
Bradi1g43607 2.0kb downstream 2.0kb downstream 2000 false Bd1: 41578054-41580053 Brachypodium distachyon
Bradi1g43607 5.0kb upstream 5.0kb upstream 25126 true Bd1: 41552928-41578053 Brachypodium distachyon
Bradi1g43607 5.0kb upstream 5.0kb upstream 5000 false Bd1: 41552928-41557927 Brachypodium distachyon
Bradi1g43607 5.0kb downstream 5.0kb downstream 25126 true Bd1: 41557928-41583053 Brachypodium distachyon
Bradi1g43607 5.0kb downstream 5.0kb downstream 5000 false Bd1: 41578054-41583053 Brachypodium distachyon
Bradi1g43607 10.0kb upstream 10.0kb upstream 30126 true Bd1: 41547928-41578053 Brachypodium distachyon
Bradi1g43607 10.0kb upstream 10.0kb upstream 10000 false Bd1: 41547928-41557927 Brachypodium distachyon
Bradi1g43607 10.0kb downstream 10.0kb downstream 30126 true Bd1: 41557928-41588053 Brachypodium distachyon
Bradi1g43607 10.0kb downstream 10.0kb downstream 10000 false Bd1: 41578054-41588053 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124577365 5269 Grass View MSA
122047422 5273 Angiosperm View MSA
121351439 5274 Embryophyte View MSA
123426817 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.72        
cufflinks 12.859     High High
cufflinks 5.146        
cufflinks 7.688        
cufflinks 0.783       Low
cufflinks 9.878     High High
cufflinks 10.475     High High
cufflinks 2.63        
cufflinks 5.694        
cufflinks 1.425        
cufflinks 5.432        
cufflinks 5.938        
cufflinks 5.907        
cufflinks 4.497        
cufflinks 1.388        
cufflinks 9.242       High
cufflinks 2.31        
cufflinks 3.017        
cufflinks 2.556        
cufflinks 0.443       Low
cufflinks 2.133        
cufflinks 2.939        
cufflinks 2.397        
cufflinks 5.215        
cufflinks 7.927       High
cufflinks 3.763        
cufflinks 6.535        
cufflinks 2.768        
cufflinks 2.667        
cufflinks 4.395        

0 Strain