Gene : Bradi1g43940 B. distachyon v3.1
Defline:  (1 of 1) PTHR12121:SF41 - CARBON CATABOLITE REPRESSOR PROTEIN 4 HOMOLOG 3 Genomic Order:  5411
Name:  ? Bradi1g43940 Secondary Identifier:  ? PAC:32802040
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g43940 0.5kb upstream 0.5kb upstream 5791 true Bd1: 42008486-42014276 Brachypodium distachyon
Bradi1g43940 0.5kb upstream 0.5kb upstream 500 false Bd1: 42008486-42008985 Brachypodium distachyon
Bradi1g43940 0.5kb downstream 0.5kb downstream 5791 true Bd1: 42008986-42014776 Brachypodium distachyon
Bradi1g43940 0.5kb downstream 0.5kb downstream 500 false Bd1: 42014277-42014776 Brachypodium distachyon
Bradi1g43940 1.0kb upstream 1.0kb upstream 6291 true Bd1: 42007986-42014276 Brachypodium distachyon
Bradi1g43940 1.0kb upstream 1.0kb upstream 1000 false Bd1: 42007986-42008985 Brachypodium distachyon
Bradi1g43940 1.0kb downstream 1.0kb downstream 6291 true Bd1: 42008986-42015276 Brachypodium distachyon
Bradi1g43940 1.0kb downstream 1.0kb downstream 1000 false Bd1: 42014277-42015276 Brachypodium distachyon
Bradi1g43940 2.0kb upstream 2.0kb upstream 7291 true Bd1: 42006986-42014276 Brachypodium distachyon
Bradi1g43940 2.0kb upstream 2.0kb upstream 2000 false Bd1: 42006986-42008985 Brachypodium distachyon
Bradi1g43940 2.0kb downstream 2.0kb downstream 7291 true Bd1: 42008986-42016276 Brachypodium distachyon
Bradi1g43940 2.0kb downstream 2.0kb downstream 2000 false Bd1: 42014277-42016276 Brachypodium distachyon
Bradi1g43940 5.0kb upstream 5.0kb upstream 10291 true Bd1: 42003986-42014276 Brachypodium distachyon
Bradi1g43940 5.0kb upstream 5.0kb upstream 5000 false Bd1: 42003986-42008985 Brachypodium distachyon
Bradi1g43940 5.0kb downstream 5.0kb downstream 10291 true Bd1: 42008986-42019276 Brachypodium distachyon
Bradi1g43940 5.0kb downstream 5.0kb downstream 5000 false Bd1: 42014277-42019276 Brachypodium distachyon
Bradi1g43940 10.0kb upstream 10.0kb upstream 15291 true Bd1: 41998986-42014276 Brachypodium distachyon
Bradi1g43940 10.0kb upstream 10.0kb upstream 10000 false Bd1: 41998986-42008985 Brachypodium distachyon
Bradi1g43940 10.0kb downstream 10.0kb downstream 15291 true Bd1: 42008986-42024276 Brachypodium distachyon
Bradi1g43940 10.0kb downstream 10.0kb downstream 10000 false Bd1: 42014277-42024276 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124582143 5269 Grass View MSA
122047277 5273 Angiosperm View MSA
121350616 5274 Embryophyte View MSA
123428031 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.75        
cufflinks 2.501        
cufflinks 2.283        
cufflinks 2.732        
cufflinks 1.739        
cufflinks 2.341        
cufflinks 2.065        
cufflinks 3.812       High
cufflinks 2.883        
cufflinks 2.439        
cufflinks 4.134       High
cufflinks 2.494        
cufflinks 3.135        
cufflinks 4.456       High
cufflinks 3.966       High
cufflinks 2.451        
cufflinks 2.23        
cufflinks 0.435       Low
cufflinks 1.279        
cufflinks 0.499       Low
cufflinks 1.054       Low
cufflinks 2.844        
cufflinks 4.154       High
cufflinks 3.037        
cufflinks 2.484        
cufflinks 2.353        
cufflinks 4.025       High
cufflinks 2.005        
cufflinks 2.347        
cufflinks 1.332        

0 Strain