Gene : Bradi5g22220 B. distachyon v3.1
Defline:  (1 of 1) PTHR10742:SF238 - POLYAMINE OXIDASE 3-RELATED Genomic Order:  2595
Name:  ? Bradi5g22220 Secondary Identifier:  ? PAC:32810763
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-6441 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi5g22220 0.5kb upstream 0.5kb upstream 5765 true Bd5: 24825278-24831042 Brachypodium distachyon
Bradi5g22220 0.5kb upstream 0.5kb upstream 500 false Bd5: 24830543-24831042 Brachypodium distachyon
Bradi5g22220 0.5kb downstream 0.5kb downstream 5765 true Bd5: 24824778-24830542 Brachypodium distachyon
Bradi5g22220 0.5kb downstream 0.5kb downstream 500 false Bd5: 24824778-24825277 Brachypodium distachyon
Bradi5g22220 1.0kb upstream 1.0kb upstream 6265 true Bd5: 24825278-24831542 Brachypodium distachyon
Bradi5g22220 1.0kb upstream 1.0kb upstream 1000 false Bd5: 24830543-24831542 Brachypodium distachyon
Bradi5g22220 1.0kb downstream 1.0kb downstream 6265 true Bd5: 24824278-24830542 Brachypodium distachyon
Bradi5g22220 1.0kb downstream 1.0kb downstream 1000 false Bd5: 24824278-24825277 Brachypodium distachyon
Bradi5g22220 2.0kb upstream 2.0kb upstream 7265 true Bd5: 24825278-24832542 Brachypodium distachyon
Bradi5g22220 2.0kb upstream 2.0kb upstream 2000 false Bd5: 24830543-24832542 Brachypodium distachyon
Bradi5g22220 2.0kb downstream 2.0kb downstream 7265 true Bd5: 24823278-24830542 Brachypodium distachyon
Bradi5g22220 2.0kb downstream 2.0kb downstream 2000 false Bd5: 24823278-24825277 Brachypodium distachyon
Bradi5g22220 5.0kb upstream 5.0kb upstream 10265 true Bd5: 24825278-24835542 Brachypodium distachyon
Bradi5g22220 5.0kb upstream 5.0kb upstream 5000 false Bd5: 24830543-24835542 Brachypodium distachyon
Bradi5g22220 5.0kb downstream 5.0kb downstream 10265 true Bd5: 24820278-24830542 Brachypodium distachyon
Bradi5g22220 5.0kb downstream 5.0kb downstream 5000 false Bd5: 24820278-24825277 Brachypodium distachyon
Bradi5g22220 10.0kb upstream 10.0kb upstream 15265 true Bd5: 24825278-24840542 Brachypodium distachyon
Bradi5g22220 10.0kb upstream 10.0kb upstream 10000 false Bd5: 24830543-24840542 Brachypodium distachyon
Bradi5g22220 10.0kb downstream 10.0kb downstream 15265 true Bd5: 24815278-24830542 Brachypodium distachyon
Bradi5g22220 10.0kb downstream 10.0kb downstream 10000 false Bd5: 24815278-24825277 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124574337 5269 Grass View MSA
122044597 5273 Angiosperm View MSA
121345919 5274 Embryophyte View MSA
123428250 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 81.481     High  
cufflinks 86.626     High  
cufflinks 90.774     High  
cufflinks 76.196     High  
cufflinks 576.23     High High
cufflinks 58.348     High  
cufflinks 72.634     High  
cufflinks 122.054     High  
cufflinks 80.139     High  
cufflinks 46.606     High  
cufflinks 209.285     High High
cufflinks 86.329     High  
cufflinks 128.023     High  
cufflinks 111.855     High  
cufflinks 156.748     High  
cufflinks 62.837     High  
cufflinks 70.172     High  
cufflinks 28.521     High Low
cufflinks 145.672     High  
cufflinks 508.288     High High
cufflinks 25.819     High Low
cufflinks 69.378     High  
cufflinks 122.32     High  
cufflinks 64.728     High  
cufflinks 53.802     High  
cufflinks 80.093     High  
cufflinks 27.059     High Low
cufflinks 68.867     High  
cufflinks 51.838     High  
cufflinks 66.634     High  

0 Strain