Gene : Bradi5g21520 B. distachyon v3.1
Defline:  (1 of 1) K14574 - ribosome maturation protein SDO1 (SDO1, SBDS) Genomic Order:  2502
Name:  ? Bradi5g21520 Secondary Identifier:  ? PAC:32811064
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi5g21520 0.5kb upstream 0.5kb upstream 4070 true Bd5: 24277668-24281737 Brachypodium distachyon
Bradi5g21520 0.5kb upstream 0.5kb upstream 500 false Bd5: 24281238-24281737 Brachypodium distachyon
Bradi5g21520 0.5kb downstream 0.5kb downstream 4070 true Bd5: 24277168-24281237 Brachypodium distachyon
Bradi5g21520 0.5kb downstream 0.5kb downstream 500 false Bd5: 24277168-24277667 Brachypodium distachyon
Bradi5g21520 1.0kb upstream 1.0kb upstream 4570 true Bd5: 24277668-24282237 Brachypodium distachyon
Bradi5g21520 1.0kb upstream 1.0kb upstream 1000 false Bd5: 24281238-24282237 Brachypodium distachyon
Bradi5g21520 1.0kb downstream 1.0kb downstream 4570 true Bd5: 24276668-24281237 Brachypodium distachyon
Bradi5g21520 1.0kb downstream 1.0kb downstream 1000 false Bd5: 24276668-24277667 Brachypodium distachyon
Bradi5g21520 2.0kb upstream 2.0kb upstream 5570 true Bd5: 24277668-24283237 Brachypodium distachyon
Bradi5g21520 2.0kb upstream 2.0kb upstream 2000 false Bd5: 24281238-24283237 Brachypodium distachyon
Bradi5g21520 2.0kb downstream 2.0kb downstream 5570 true Bd5: 24275668-24281237 Brachypodium distachyon
Bradi5g21520 2.0kb downstream 2.0kb downstream 2000 false Bd5: 24275668-24277667 Brachypodium distachyon
Bradi5g21520 5.0kb upstream 5.0kb upstream 8570 true Bd5: 24277668-24286237 Brachypodium distachyon
Bradi5g21520 5.0kb upstream 5.0kb upstream 5000 false Bd5: 24281238-24286237 Brachypodium distachyon
Bradi5g21520 5.0kb downstream 5.0kb downstream 8570 true Bd5: 24272668-24281237 Brachypodium distachyon
Bradi5g21520 5.0kb downstream 5.0kb downstream 5000 false Bd5: 24272668-24277667 Brachypodium distachyon
Bradi5g21520 10.0kb upstream 10.0kb upstream 13570 true Bd5: 24277668-24291237 Brachypodium distachyon
Bradi5g21520 10.0kb upstream 10.0kb upstream 10000 false Bd5: 24281238-24291237 Brachypodium distachyon
Bradi5g21520 10.0kb downstream 10.0kb downstream 13570 true Bd5: 24267668-24281237 Brachypodium distachyon
Bradi5g21520 10.0kb downstream 10.0kb downstream 10000 false Bd5: 24267668-24277667 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124572402 5269 Grass View MSA
122043852 5273 Angiosperm View MSA
121346736 5274 Embryophyte View MSA
123428704 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.711     High High
cufflinks 6.54        
cufflinks 5.602        
cufflinks 6.347        
cufflinks 8.986     High  
cufflinks 6.245        
cufflinks 6.473        
cufflinks 6.763        
cufflinks 6.02        
cufflinks 6.339        
cufflinks 5.337        
cufflinks 5.777        
cufflinks 4.363       Low
cufflinks 5.05       Low
cufflinks 7.82        
cufflinks 6.131        
cufflinks 8.627        
cufflinks 10.154       High
cufflinks 9.914       High
cufflinks 12.631     High High
cufflinks 7.612        
cufflinks 5.642        
cufflinks 6.545        
cufflinks 5.896        
cufflinks 6.547        
cufflinks 4.963       Low
cufflinks 6.285        
cufflinks 5.589        
cufflinks 5.847        
cufflinks 7.072        

0 Strain