Gene : Bradi5g21310 B. distachyon v3.1
Defline:  (1 of 2) 1.3.3.3 - Coproporphyrinogen oxidase / Coproporphyrinogenase Genomic Order:  2473
Name:  ? Bradi5g21310 Secondary Identifier:  ? PAC:32808989
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon CHLOROPHYLL-SYN Brachypodium distachyon pathologic  
Bdistachyon HEME-BIOSYNTHESIS-II Brachypodium distachyon pathologic  
Bdistachyon PWY-5918 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi5g21310 0.5kb upstream 0.5kb upstream 5699 true Bd5: 24123227-24128925 Brachypodium distachyon
Bradi5g21310 0.5kb upstream 0.5kb upstream 500 false Bd5: 24123227-24123726 Brachypodium distachyon
Bradi5g21310 0.5kb downstream 0.5kb downstream 5699 true Bd5: 24123727-24129425 Brachypodium distachyon
Bradi5g21310 0.5kb downstream 0.5kb downstream 500 false Bd5: 24128926-24129425 Brachypodium distachyon
Bradi5g21310 1.0kb upstream 1.0kb upstream 6199 true Bd5: 24122727-24128925 Brachypodium distachyon
Bradi5g21310 1.0kb upstream 1.0kb upstream 1000 false Bd5: 24122727-24123726 Brachypodium distachyon
Bradi5g21310 1.0kb downstream 1.0kb downstream 6199 true Bd5: 24123727-24129925 Brachypodium distachyon
Bradi5g21310 1.0kb downstream 1.0kb downstream 1000 false Bd5: 24128926-24129925 Brachypodium distachyon
Bradi5g21310 2.0kb upstream 2.0kb upstream 7199 true Bd5: 24121727-24128925 Brachypodium distachyon
Bradi5g21310 2.0kb upstream 2.0kb upstream 2000 false Bd5: 24121727-24123726 Brachypodium distachyon
Bradi5g21310 2.0kb downstream 2.0kb downstream 7199 true Bd5: 24123727-24130925 Brachypodium distachyon
Bradi5g21310 2.0kb downstream 2.0kb downstream 2000 false Bd5: 24128926-24130925 Brachypodium distachyon
Bradi5g21310 5.0kb upstream 5.0kb upstream 10199 true Bd5: 24118727-24128925 Brachypodium distachyon
Bradi5g21310 5.0kb upstream 5.0kb upstream 5000 false Bd5: 24118727-24123726 Brachypodium distachyon
Bradi5g21310 5.0kb downstream 5.0kb downstream 10199 true Bd5: 24123727-24133925 Brachypodium distachyon
Bradi5g21310 5.0kb downstream 5.0kb downstream 5000 false Bd5: 24128926-24133925 Brachypodium distachyon
Bradi5g21310 10.0kb upstream 10.0kb upstream 15199 true Bd5: 24113727-24128925 Brachypodium distachyon
Bradi5g21310 10.0kb upstream 10.0kb upstream 10000 false Bd5: 24113727-24123726 Brachypodium distachyon
Bradi5g21310 10.0kb downstream 10.0kb downstream 15199 true Bd5: 24123727-24138925 Brachypodium distachyon
Bradi5g21310 10.0kb downstream 10.0kb downstream 10000 false Bd5: 24128926-24138925 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124572100 5269 Grass View MSA
122043250 5273 Angiosperm View MSA
121345223 5274 Embryophyte View MSA
123424727 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 39.832     High  
cufflinks 57.833     High  
cufflinks 51.282     High  
cufflinks 69.324     High High
cufflinks 40.485     High  
cufflinks 46.068     High  
cufflinks 53.472     High  
cufflinks 31.629     High  
cufflinks 33.807     High  
cufflinks 61.586     High  
cufflinks 32.578     High  
cufflinks 38.619     High  
cufflinks 34.9     High  
cufflinks 32.579     High  
cufflinks 32.913     High  
cufflinks 48.023     High  
cufflinks 52.392     High  
cufflinks 5.408       Low
cufflinks 34.125     High  
cufflinks 13.665     High Low
cufflinks 34.996     High  
cufflinks 40.788     High  
cufflinks 33.213     High  
cufflinks 38.093     High  
cufflinks 54.175     High  
cufflinks 60.826     High  
cufflinks 16.205     High Low
cufflinks 51.843     High  
cufflinks 48.211     High  
cufflinks 44.021     High  

0 Strain