Gene : Bradi1g42700 B. distachyon v3.1
Defline:  (1 of 1) PTHR14894 - CDK5 REGULATORY SUBUNIT-ASSOCIATED PROTEIN 3 Genomic Order:  5244
Name:  ? Bradi1g42700 Secondary Identifier:  ? PAC:32803191
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g42700 0.5kb upstream 0.5kb upstream 3684 true Bd1: 40146871-40150554 Brachypodium distachyon
Bradi1g42700 0.5kb upstream 0.5kb upstream 500 false Bd1: 40150055-40150554 Brachypodium distachyon
Bradi1g42700 0.5kb downstream 0.5kb downstream 3684 true Bd1: 40146371-40150054 Brachypodium distachyon
Bradi1g42700 0.5kb downstream 0.5kb downstream 500 false Bd1: 40146371-40146870 Brachypodium distachyon
Bradi1g42700 1.0kb upstream 1.0kb upstream 4184 true Bd1: 40146871-40151054 Brachypodium distachyon
Bradi1g42700 1.0kb upstream 1.0kb upstream 1000 false Bd1: 40150055-40151054 Brachypodium distachyon
Bradi1g42700 1.0kb downstream 1.0kb downstream 4184 true Bd1: 40145871-40150054 Brachypodium distachyon
Bradi1g42700 1.0kb downstream 1.0kb downstream 1000 false Bd1: 40145871-40146870 Brachypodium distachyon
Bradi1g42700 2.0kb upstream 2.0kb upstream 5184 true Bd1: 40146871-40152054 Brachypodium distachyon
Bradi1g42700 2.0kb upstream 2.0kb upstream 2000 false Bd1: 40150055-40152054 Brachypodium distachyon
Bradi1g42700 2.0kb downstream 2.0kb downstream 5184 true Bd1: 40144871-40150054 Brachypodium distachyon
Bradi1g42700 2.0kb downstream 2.0kb downstream 2000 false Bd1: 40144871-40146870 Brachypodium distachyon
Bradi1g42700 5.0kb upstream 5.0kb upstream 8184 true Bd1: 40146871-40155054 Brachypodium distachyon
Bradi1g42700 5.0kb upstream 5.0kb upstream 5000 false Bd1: 40150055-40155054 Brachypodium distachyon
Bradi1g42700 5.0kb downstream 5.0kb downstream 8184 true Bd1: 40141871-40150054 Brachypodium distachyon
Bradi1g42700 5.0kb downstream 5.0kb downstream 5000 false Bd1: 40141871-40146870 Brachypodium distachyon
Bradi1g42700 10.0kb upstream 10.0kb upstream 13184 true Bd1: 40146871-40160054 Brachypodium distachyon
Bradi1g42700 10.0kb upstream 10.0kb upstream 10000 false Bd1: 40150055-40160054 Brachypodium distachyon
Bradi1g42700 10.0kb downstream 10.0kb downstream 13184 true Bd1: 40136871-40150054 Brachypodium distachyon
Bradi1g42700 10.0kb downstream 10.0kb downstream 10000 false Bd1: 40136871-40146870 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124575645 5269 Grass View MSA
122046505 5273 Angiosperm View MSA
121347618 5274 Embryophyte View MSA
123424733 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.57       Low
cufflinks 11.03     High  
cufflinks 11.628     High  
cufflinks 9.945        
cufflinks 10.769     High  
cufflinks 9.696     High  
cufflinks 9.828     High  
cufflinks 10.054     High  
cufflinks 9.228        
cufflinks 10.399     High  
cufflinks 10.298     High  
cufflinks 9.825     High  
cufflinks 8.252     High  
cufflinks 8.146     High  
cufflinks 8.455        
cufflinks 10.298     High  
cufflinks 9.928        
cufflinks 21.039     High High
cufflinks 15.041     High High
cufflinks 8.556        
cufflinks 12.005     High  
cufflinks 12.383     High  
cufflinks 9.715     High  
cufflinks 9.064        
cufflinks 9.002        
cufflinks 11.61     High  
cufflinks 11.524     High  
cufflinks 12.513     High  
cufflinks 11.509     High  
cufflinks 12.533     High  

0 Strain