Gene : Bradi5g20040 B. distachyon v3.1
Defline:  (1 of 1) K14555 - U3 small nucleolar RNA-associated protein 13 (UTP13, TBL3) Genomic Order:  2322
Name:  ? Bradi5g20040 Secondary Identifier:  ? PAC:32810191
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi5g20040 0.5kb upstream 0.5kb upstream 6766 true Bd5: 23089138-23095903 Brachypodium distachyon
Bradi5g20040 0.5kb upstream 0.5kb upstream 500 false Bd5: 23095404-23095903 Brachypodium distachyon
Bradi5g20040 0.5kb downstream 0.5kb downstream 6766 true Bd5: 23088638-23095403 Brachypodium distachyon
Bradi5g20040 0.5kb downstream 0.5kb downstream 500 false Bd5: 23088638-23089137 Brachypodium distachyon
Bradi5g20040 1.0kb upstream 1.0kb upstream 7266 true Bd5: 23089138-23096403 Brachypodium distachyon
Bradi5g20040 1.0kb upstream 1.0kb upstream 1000 false Bd5: 23095404-23096403 Brachypodium distachyon
Bradi5g20040 1.0kb downstream 1.0kb downstream 7266 true Bd5: 23088138-23095403 Brachypodium distachyon
Bradi5g20040 1.0kb downstream 1.0kb downstream 1000 false Bd5: 23088138-23089137 Brachypodium distachyon
Bradi5g20040 2.0kb upstream 2.0kb upstream 8266 true Bd5: 23089138-23097403 Brachypodium distachyon
Bradi5g20040 2.0kb upstream 2.0kb upstream 2000 false Bd5: 23095404-23097403 Brachypodium distachyon
Bradi5g20040 2.0kb downstream 2.0kb downstream 8266 true Bd5: 23087138-23095403 Brachypodium distachyon
Bradi5g20040 2.0kb downstream 2.0kb downstream 2000 false Bd5: 23087138-23089137 Brachypodium distachyon
Bradi5g20040 5.0kb upstream 5.0kb upstream 11266 true Bd5: 23089138-23100403 Brachypodium distachyon
Bradi5g20040 5.0kb upstream 5.0kb upstream 5000 false Bd5: 23095404-23100403 Brachypodium distachyon
Bradi5g20040 5.0kb downstream 5.0kb downstream 11266 true Bd5: 23084138-23095403 Brachypodium distachyon
Bradi5g20040 5.0kb downstream 5.0kb downstream 5000 false Bd5: 23084138-23089137 Brachypodium distachyon
Bradi5g20040 10.0kb upstream 10.0kb upstream 16266 true Bd5: 23089138-23105403 Brachypodium distachyon
Bradi5g20040 10.0kb upstream 10.0kb upstream 10000 false Bd5: 23095404-23105403 Brachypodium distachyon
Bradi5g20040 10.0kb downstream 10.0kb downstream 16266 true Bd5: 23079138-23095403 Brachypodium distachyon
Bradi5g20040 10.0kb downstream 10.0kb downstream 10000 false Bd5: 23079138-23089137 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041178 5273 Angiosperm View MSA
124578593 5269 Grass View MSA
121349403 5274 Embryophyte View MSA
123428044 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.858        
cufflinks 5.849       High
cufflinks 3.863        
cufflinks 4.746        
cufflinks 0.824       Low
cufflinks 4.763        
cufflinks 4.66        
cufflinks 3.716        
cufflinks 4.612        
cufflinks 1.514        
cufflinks 1.348        
cufflinks 3.511        
cufflinks 0.961       Low
cufflinks 1.147        
cufflinks 1.548        
cufflinks 5.13        
cufflinks 2.341        
cufflinks 9.403       High
cufflinks 2.27        
cufflinks 0.117     Low Low
cufflinks 2.926        
cufflinks 2.85        
cufflinks 3.185        
cufflinks 3.44        
cufflinks 4.419        
cufflinks 2.546        
cufflinks 1.33        
cufflinks 2.058        
cufflinks 2.111        
cufflinks 4.87        

0 Strain