Gene : Bradi5g17160 B. distachyon v3.1
Defline:  (1 of 2) PTHR12358//PTHR12358:SF39 - SPHINGOSINE KINASE // SUBFAMILY NOT NAMED Genomic Order:  1974
Name:  ? Bradi5g17160 Secondary Identifier:  ? PAC:32809099
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-5129 Brachypodium distachyon pathologic  
Bdistachyon PWY-6483 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi5g17160 0.5kb upstream 0.5kb upstream 5634 true Bd5: 20572203-20577836 Brachypodium distachyon
Bradi5g17160 0.5kb upstream 0.5kb upstream 500 false Bd5: 20572203-20572702 Brachypodium distachyon
Bradi5g17160 0.5kb downstream 0.5kb downstream 5634 true Bd5: 20572703-20578336 Brachypodium distachyon
Bradi5g17160 0.5kb downstream 0.5kb downstream 500 false Bd5: 20577837-20578336 Brachypodium distachyon
Bradi5g17160 1.0kb upstream 1.0kb upstream 6134 true Bd5: 20571703-20577836 Brachypodium distachyon
Bradi5g17160 1.0kb upstream 1.0kb upstream 1000 false Bd5: 20571703-20572702 Brachypodium distachyon
Bradi5g17160 1.0kb downstream 1.0kb downstream 6134 true Bd5: 20572703-20578836 Brachypodium distachyon
Bradi5g17160 1.0kb downstream 1.0kb downstream 1000 false Bd5: 20577837-20578836 Brachypodium distachyon
Bradi5g17160 2.0kb upstream 2.0kb upstream 7134 true Bd5: 20570703-20577836 Brachypodium distachyon
Bradi5g17160 2.0kb upstream 2.0kb upstream 2000 false Bd5: 20570703-20572702 Brachypodium distachyon
Bradi5g17160 2.0kb downstream 2.0kb downstream 7134 true Bd5: 20572703-20579836 Brachypodium distachyon
Bradi5g17160 2.0kb downstream 2.0kb downstream 2000 false Bd5: 20577837-20579836 Brachypodium distachyon
Bradi5g17160 5.0kb upstream 5.0kb upstream 10134 true Bd5: 20567703-20577836 Brachypodium distachyon
Bradi5g17160 5.0kb upstream 5.0kb upstream 5000 false Bd5: 20567703-20572702 Brachypodium distachyon
Bradi5g17160 5.0kb downstream 5.0kb downstream 10134 true Bd5: 20572703-20582836 Brachypodium distachyon
Bradi5g17160 5.0kb downstream 5.0kb downstream 5000 false Bd5: 20577837-20582836 Brachypodium distachyon
Bradi5g17160 10.0kb upstream 10.0kb upstream 15134 true Bd5: 20562703-20577836 Brachypodium distachyon
Bradi5g17160 10.0kb upstream 10.0kb upstream 10000 false Bd5: 20562703-20572702 Brachypodium distachyon
Bradi5g17160 10.0kb downstream 10.0kb downstream 15134 true Bd5: 20572703-20587836 Brachypodium distachyon
Bradi5g17160 10.0kb downstream 10.0kb downstream 10000 false Bd5: 20577837-20587836 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124569465 5269 Grass View MSA
122046814 5273 Angiosperm View MSA
121349004 5274 Embryophyte View MSA
123428396 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.76     High  
cufflinks 12.494     High  
cufflinks 11.392     High  
cufflinks 10.436     High  
cufflinks 9.75     High  
cufflinks 11.947     High  
cufflinks 10.645     High  
cufflinks 12.749     High  
cufflinks 12.062     High  
cufflinks 9.824        
cufflinks 9.059     High  
cufflinks 15.25     High  
cufflinks 8.176     High Low
cufflinks 7.595       Low
cufflinks 12.067     High  
cufflinks 12.73     High  
cufflinks 9.952        
cufflinks 23.528     High High
cufflinks 13.57     High  
cufflinks 6.765       Low
cufflinks 17.797     High High
cufflinks 14.55     High  
cufflinks 13.459     High  
cufflinks 12.611     High  
cufflinks 11.007     High  
cufflinks 11.342     High  
cufflinks 10.106     High  
cufflinks 10.523        
cufflinks 12.487     High  
cufflinks 20.457     High High

0 Strain