Gene : Bradi5g16055 B. distachyon v3.1
Defline:  (1 of 6) PF05757 - Oxygen evolving enhancer protein 3 (PsbQ) (PsbQ) Genomic Order:  1828
Name:  ? Bradi5g16055 Secondary Identifier:  ? PAC:32808789
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi5g16055 0.5kb upstream 0.5kb upstream 1444 true Bd5: 19591801-19593244 Brachypodium distachyon
Bradi5g16055 0.5kb upstream 0.5kb upstream 500 false Bd5: 19591801-19592300 Brachypodium distachyon
Bradi5g16055 0.5kb downstream 0.5kb downstream 1444 true Bd5: 19592301-19593744 Brachypodium distachyon
Bradi5g16055 0.5kb downstream 0.5kb downstream 500 false Bd5: 19593245-19593744 Brachypodium distachyon
Bradi5g16055 1.0kb upstream 1.0kb upstream 1944 true Bd5: 19591301-19593244 Brachypodium distachyon
Bradi5g16055 1.0kb upstream 1.0kb upstream 1000 false Bd5: 19591301-19592300 Brachypodium distachyon
Bradi5g16055 1.0kb downstream 1.0kb downstream 1944 true Bd5: 19592301-19594244 Brachypodium distachyon
Bradi5g16055 1.0kb downstream 1.0kb downstream 1000 false Bd5: 19593245-19594244 Brachypodium distachyon
Bradi5g16055 2.0kb upstream 2.0kb upstream 2944 true Bd5: 19590301-19593244 Brachypodium distachyon
Bradi5g16055 2.0kb upstream 2.0kb upstream 2000 false Bd5: 19590301-19592300 Brachypodium distachyon
Bradi5g16055 2.0kb downstream 2.0kb downstream 2944 true Bd5: 19592301-19595244 Brachypodium distachyon
Bradi5g16055 2.0kb downstream 2.0kb downstream 2000 false Bd5: 19593245-19595244 Brachypodium distachyon
Bradi5g16055 5.0kb upstream 5.0kb upstream 5944 true Bd5: 19587301-19593244 Brachypodium distachyon
Bradi5g16055 5.0kb upstream 5.0kb upstream 5000 false Bd5: 19587301-19592300 Brachypodium distachyon
Bradi5g16055 5.0kb downstream 5.0kb downstream 5944 true Bd5: 19592301-19598244 Brachypodium distachyon
Bradi5g16055 5.0kb downstream 5.0kb downstream 5000 false Bd5: 19593245-19598244 Brachypodium distachyon
Bradi5g16055 10.0kb upstream 10.0kb upstream 10944 true Bd5: 19582301-19593244 Brachypodium distachyon
Bradi5g16055 10.0kb upstream 10.0kb upstream 10000 false Bd5: 19582301-19592300 Brachypodium distachyon
Bradi5g16055 10.0kb downstream 10.0kb downstream 10944 true Bd5: 19592301-19603244 Brachypodium distachyon
Bradi5g16055 10.0kb downstream 10.0kb downstream 10000 false Bd5: 19593245-19603244 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124569020 5269 Grass View MSA
122049164 5273 Angiosperm View MSA
121311275 5274 Embryophyte View MSA
123348590 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.145        
cufflinks 4.712        
cufflinks 5.5       High
cufflinks 4.195        
cufflinks 0.562       Low
cufflinks 3.053        
cufflinks 3.95        
cufflinks 1.951        
cufflinks 2.545        
cufflinks 2.669        
cufflinks 3.278        
cufflinks 2.185        
cufflinks 2.474        
cufflinks 2.22        
cufflinks 0.994        
cufflinks 2.914        
cufflinks 2.532        
cufflinks 0.309       Low
cufflinks 2.794        
cufflinks 0.209       Low
cufflinks 2.223        
cufflinks 3.844        
cufflinks 2.135        
cufflinks 2.739        
cufflinks 3.33        
cufflinks 4.977       High
cufflinks 2.884        
cufflinks 5.881       High
cufflinks 5.057       High
cufflinks 2.134        

0 Strain