Gene : Bradi5g16540 B. distachyon v3.1
Defline:  (1 of 2) PTHR12313//PTHR12313:SF9 - RNF5 // SUBFAMILY NOT NAMED Genomic Order:  1888
Name:  ? Bradi5g16540 Secondary Identifier:  ? PAC:32808319
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi5g16540 0.5kb upstream 0.5kb upstream 4220 true Bd5: 20040449-20044668 Brachypodium distachyon
Bradi5g16540 0.5kb upstream 0.5kb upstream 500 false Bd5: 20044169-20044668 Brachypodium distachyon
Bradi5g16540 0.5kb downstream 0.5kb downstream 4220 true Bd5: 20039949-20044168 Brachypodium distachyon
Bradi5g16540 0.5kb downstream 0.5kb downstream 500 false Bd5: 20039949-20040448 Brachypodium distachyon
Bradi5g16540 1.0kb upstream 1.0kb upstream 4720 true Bd5: 20040449-20045168 Brachypodium distachyon
Bradi5g16540 1.0kb upstream 1.0kb upstream 1000 false Bd5: 20044169-20045168 Brachypodium distachyon
Bradi5g16540 1.0kb downstream 1.0kb downstream 4720 true Bd5: 20039449-20044168 Brachypodium distachyon
Bradi5g16540 1.0kb downstream 1.0kb downstream 1000 false Bd5: 20039449-20040448 Brachypodium distachyon
Bradi5g16540 2.0kb upstream 2.0kb upstream 5720 true Bd5: 20040449-20046168 Brachypodium distachyon
Bradi5g16540 2.0kb upstream 2.0kb upstream 2000 false Bd5: 20044169-20046168 Brachypodium distachyon
Bradi5g16540 2.0kb downstream 2.0kb downstream 5720 true Bd5: 20038449-20044168 Brachypodium distachyon
Bradi5g16540 2.0kb downstream 2.0kb downstream 2000 false Bd5: 20038449-20040448 Brachypodium distachyon
Bradi5g16540 5.0kb upstream 5.0kb upstream 8720 true Bd5: 20040449-20049168 Brachypodium distachyon
Bradi5g16540 5.0kb upstream 5.0kb upstream 5000 false Bd5: 20044169-20049168 Brachypodium distachyon
Bradi5g16540 5.0kb downstream 5.0kb downstream 8720 true Bd5: 20035449-20044168 Brachypodium distachyon
Bradi5g16540 5.0kb downstream 5.0kb downstream 5000 false Bd5: 20035449-20040448 Brachypodium distachyon
Bradi5g16540 10.0kb upstream 10.0kb upstream 13720 true Bd5: 20040449-20054168 Brachypodium distachyon
Bradi5g16540 10.0kb upstream 10.0kb upstream 10000 false Bd5: 20044169-20054168 Brachypodium distachyon
Bradi5g16540 10.0kb downstream 10.0kb downstream 13720 true Bd5: 20030449-20044168 Brachypodium distachyon
Bradi5g16540 10.0kb downstream 10.0kb downstream 10000 false Bd5: 20030449-20040448 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124591154 5269 Grass View MSA
122051949 5273 Angiosperm View MSA
121312825 5274 Embryophyte View MSA
123428794 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.438     High High
cufflinks 13.226     High  
cufflinks 14.129     High  
cufflinks 11.063     High  
cufflinks 18.348     High  
cufflinks 14.71     High  
cufflinks 15.752     High  
cufflinks 11.21     High  
cufflinks 13.319     High  
cufflinks 8.201       Low
cufflinks 16.804     High  
cufflinks 14.991     High  
cufflinks 17.699     High  
cufflinks 11.605     High  
cufflinks 13.143     High  
cufflinks 15.713     High  
cufflinks 9.351        
cufflinks 27.246     High High
cufflinks 8.284       Low
cufflinks 15.408     High  
cufflinks 20.232     High High
cufflinks 6.944       Low
cufflinks 8.883       Low
cufflinks 12.805     High  
cufflinks 14.042     High  
cufflinks 13.277     High  
cufflinks 15.67     High  
cufflinks 11.095     High  
cufflinks 7.654       Low
cufflinks 21.875     High High

0 Strain