Gene : Bradi1g47290 B. distachyon v3.1
Defline:  (1 of 12) PF00651//PF03000 - BTB/POZ domain (BTB) // NPH3 family (NPH3) Genomic Order:  5882
Name:  ? Bradi1g47290 Secondary Identifier:  ? PAC:32804723
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g47290 0.5kb upstream 0.5kb upstream 4711 true Bd1: 45963416-45968126 Brachypodium distachyon
Bradi1g47290 0.5kb upstream 0.5kb upstream 500 false Bd1: 45963416-45963915 Brachypodium distachyon
Bradi1g47290 0.5kb downstream 0.5kb downstream 4711 true Bd1: 45963916-45968626 Brachypodium distachyon
Bradi1g47290 0.5kb downstream 0.5kb downstream 500 false Bd1: 45968127-45968626 Brachypodium distachyon
Bradi1g47290 1.0kb upstream 1.0kb upstream 5211 true Bd1: 45962916-45968126 Brachypodium distachyon
Bradi1g47290 1.0kb upstream 1.0kb upstream 1000 false Bd1: 45962916-45963915 Brachypodium distachyon
Bradi1g47290 1.0kb downstream 1.0kb downstream 5211 true Bd1: 45963916-45969126 Brachypodium distachyon
Bradi1g47290 1.0kb downstream 1.0kb downstream 1000 false Bd1: 45968127-45969126 Brachypodium distachyon
Bradi1g47290 2.0kb upstream 2.0kb upstream 6211 true Bd1: 45961916-45968126 Brachypodium distachyon
Bradi1g47290 2.0kb upstream 2.0kb upstream 2000 false Bd1: 45961916-45963915 Brachypodium distachyon
Bradi1g47290 2.0kb downstream 2.0kb downstream 6211 true Bd1: 45963916-45970126 Brachypodium distachyon
Bradi1g47290 2.0kb downstream 2.0kb downstream 2000 false Bd1: 45968127-45970126 Brachypodium distachyon
Bradi1g47290 5.0kb upstream 5.0kb upstream 9211 true Bd1: 45958916-45968126 Brachypodium distachyon
Bradi1g47290 5.0kb upstream 5.0kb upstream 5000 false Bd1: 45958916-45963915 Brachypodium distachyon
Bradi1g47290 5.0kb downstream 5.0kb downstream 9211 true Bd1: 45963916-45973126 Brachypodium distachyon
Bradi1g47290 5.0kb downstream 5.0kb downstream 5000 false Bd1: 45968127-45973126 Brachypodium distachyon
Bradi1g47290 10.0kb upstream 10.0kb upstream 14211 true Bd1: 45953916-45968126 Brachypodium distachyon
Bradi1g47290 10.0kb upstream 10.0kb upstream 10000 false Bd1: 45953916-45963915 Brachypodium distachyon
Bradi1g47290 10.0kb downstream 10.0kb downstream 14211 true Bd1: 45963916-45978126 Brachypodium distachyon
Bradi1g47290 10.0kb downstream 10.0kb downstream 10000 false Bd1: 45968127-45978126 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124582697 5269 Grass View MSA
122043387 5273 Angiosperm View MSA
121310115 5274 Embryophyte View MSA
123347692 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.468        
cufflinks 0.625        
cufflinks 0.567        
cufflinks 0.534        
cufflinks 0.081     Low Low
cufflinks 0.514        
cufflinks 0.63        
cufflinks 0.318        
cufflinks 0.539        
cufflinks 0.315        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.359        
cufflinks 0.009     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.102        
cufflinks 0.492        
cufflinks 0.349        
cufflinks 0.772        
cufflinks 0.217        
cufflinks 0.01     Low Low
cufflinks 0.488        
cufflinks 0.419        
cufflinks 0.344        
cufflinks 0.388        
cufflinks 0.683        
cufflinks 0.416        
cufflinks 0.014     Low Low
cufflinks 0.492        
cufflinks 0.282        
cufflinks 0.767        

0 Strain