Gene : Bradi1g52990 B. distachyon v3.1
Defline:  (1 of 1) PTHR15629//PTHR15629:SF2 - SH3YL1 PROTEIN // SH3 DOMAIN-CONTAINING YSC84-LIKE PROTEIN 1 Genomic Order:  6643
Name:  ? Bradi1g52990 Secondary Identifier:  ? PAC:32804441
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g52990 0.5kb upstream 0.5kb upstream 4537 true Bd1: 51551306-51555842 Brachypodium distachyon
Bradi1g52990 0.5kb upstream 0.5kb upstream 500 false Bd1: 51555343-51555842 Brachypodium distachyon
Bradi1g52990 0.5kb downstream 0.5kb downstream 4537 true Bd1: 51550806-51555342 Brachypodium distachyon
Bradi1g52990 0.5kb downstream 0.5kb downstream 500 false Bd1: 51550806-51551305 Brachypodium distachyon
Bradi1g52990 1.0kb upstream 1.0kb upstream 5037 true Bd1: 51551306-51556342 Brachypodium distachyon
Bradi1g52990 1.0kb upstream 1.0kb upstream 1000 false Bd1: 51555343-51556342 Brachypodium distachyon
Bradi1g52990 1.0kb downstream 1.0kb downstream 5037 true Bd1: 51550306-51555342 Brachypodium distachyon
Bradi1g52990 1.0kb downstream 1.0kb downstream 1000 false Bd1: 51550306-51551305 Brachypodium distachyon
Bradi1g52990 2.0kb upstream 2.0kb upstream 6037 true Bd1: 51551306-51557342 Brachypodium distachyon
Bradi1g52990 2.0kb upstream 2.0kb upstream 2000 false Bd1: 51555343-51557342 Brachypodium distachyon
Bradi1g52990 2.0kb downstream 2.0kb downstream 6037 true Bd1: 51549306-51555342 Brachypodium distachyon
Bradi1g52990 2.0kb downstream 2.0kb downstream 2000 false Bd1: 51549306-51551305 Brachypodium distachyon
Bradi1g52990 5.0kb upstream 5.0kb upstream 9037 true Bd1: 51551306-51560342 Brachypodium distachyon
Bradi1g52990 5.0kb upstream 5.0kb upstream 5000 false Bd1: 51555343-51560342 Brachypodium distachyon
Bradi1g52990 5.0kb downstream 5.0kb downstream 9037 true Bd1: 51546306-51555342 Brachypodium distachyon
Bradi1g52990 5.0kb downstream 5.0kb downstream 5000 false Bd1: 51546306-51551305 Brachypodium distachyon
Bradi1g52990 10.0kb upstream 10.0kb upstream 14037 true Bd1: 51551306-51565342 Brachypodium distachyon
Bradi1g52990 10.0kb upstream 10.0kb upstream 10000 false Bd1: 51555343-51565342 Brachypodium distachyon
Bradi1g52990 10.0kb downstream 10.0kb downstream 14037 true Bd1: 51541306-51555342 Brachypodium distachyon
Bradi1g52990 10.0kb downstream 10.0kb downstream 10000 false Bd1: 51541306-51551305 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124575860 5269 Grass View MSA
122046278 5273 Angiosperm View MSA
121345874 5274 Embryophyte View MSA
123426176 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.247       Low
cufflinks 3.459        
cufflinks 3.192        
cufflinks 2.876        
cufflinks 2.678        
cufflinks 4.343        
cufflinks 3.515        
cufflinks 3.661        
cufflinks 4.377        
cufflinks 3.038        
cufflinks 6.34       High
cufflinks 4.687        
cufflinks 5.891       High
cufflinks 5.955       High
cufflinks 3.692        
cufflinks 4.27        
cufflinks 2.706        
cufflinks 3.092        
cufflinks 2.437       Low
cufflinks 3.919        
cufflinks 2.235       Low
cufflinks 4.092        
cufflinks 3.414        
cufflinks 3.942        
cufflinks 3.594        
cufflinks 3.17        
cufflinks 7.166       High
cufflinks 3.217        
cufflinks 3.386        
cufflinks 2.599        

0 Strain