Gene : Bradi1g54000 B. distachyon v3.1
Defline:  (1 of 15) PF00234 - Protease inhibitor/seed storage/LTP family (Tryp_alpha_amyl) Genomic Order:  6766
Name:  ? Bradi1g54000 Secondary Identifier:  ? PAC:32802241
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g54000 0.5kb upstream 0.5kb upstream 1627 true Bd1: 52537475-52539101 Brachypodium distachyon
Bradi1g54000 0.5kb upstream 0.5kb upstream 500 false Bd1: 52538602-52539101 Brachypodium distachyon
Bradi1g54000 0.5kb downstream 0.5kb downstream 1627 true Bd1: 52536975-52538601 Brachypodium distachyon
Bradi1g54000 0.5kb downstream 0.5kb downstream 500 false Bd1: 52536975-52537474 Brachypodium distachyon
Bradi1g54000 1.0kb upstream 1.0kb upstream 2127 true Bd1: 52537475-52539601 Brachypodium distachyon
Bradi1g54000 1.0kb upstream 1.0kb upstream 1000 false Bd1: 52538602-52539601 Brachypodium distachyon
Bradi1g54000 1.0kb downstream 1.0kb downstream 2127 true Bd1: 52536475-52538601 Brachypodium distachyon
Bradi1g54000 1.0kb downstream 1.0kb downstream 1000 false Bd1: 52536475-52537474 Brachypodium distachyon
Bradi1g54000 2.0kb upstream 2.0kb upstream 3127 true Bd1: 52537475-52540601 Brachypodium distachyon
Bradi1g54000 2.0kb upstream 2.0kb upstream 2000 false Bd1: 52538602-52540601 Brachypodium distachyon
Bradi1g54000 2.0kb downstream 2.0kb downstream 3127 true Bd1: 52535475-52538601 Brachypodium distachyon
Bradi1g54000 2.0kb downstream 2.0kb downstream 2000 false Bd1: 52535475-52537474 Brachypodium distachyon
Bradi1g54000 5.0kb upstream 5.0kb upstream 6127 true Bd1: 52537475-52543601 Brachypodium distachyon
Bradi1g54000 5.0kb upstream 5.0kb upstream 5000 false Bd1: 52538602-52543601 Brachypodium distachyon
Bradi1g54000 5.0kb downstream 5.0kb downstream 6127 true Bd1: 52532475-52538601 Brachypodium distachyon
Bradi1g54000 5.0kb downstream 5.0kb downstream 5000 false Bd1: 52532475-52537474 Brachypodium distachyon
Bradi1g54000 10.0kb upstream 10.0kb upstream 11127 true Bd1: 52537475-52548601 Brachypodium distachyon
Bradi1g54000 10.0kb upstream 10.0kb upstream 10000 false Bd1: 52538602-52548601 Brachypodium distachyon
Bradi1g54000 10.0kb downstream 10.0kb downstream 11127 true Bd1: 52527475-52538601 Brachypodium distachyon
Bradi1g54000 10.0kb downstream 10.0kb downstream 10000 false Bd1: 52527475-52537474 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121992250 5273 Angiosperm View MSA
124567988 5269 Grass View MSA
121262613 5274 Embryophyte View MSA
123301252 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.121        
cufflinks 0.09     Low  
cufflinks 0.064     Low  
cufflinks 0.084     Low  
cufflinks 0.114        
cufflinks 0.089     Low  
cufflinks 0.05     Low  
cufflinks 0.058     Low  
cufflinks 0.18        
cufflinks 0.073     Low  
cufflinks 0.016     Low Low
cufflinks 0.06     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.084        
cufflinks 0.073     Low  
cufflinks 0.135     Low  
cufflinks 3.702       High
cufflinks 0.236        
cufflinks 0.874       High
cufflinks 1.149       High
cufflinks 0.109     Low  
cufflinks 0.055     Low  
cufflinks 0.171        
cufflinks 0.15        
cufflinks 0.109        
cufflinks 0.065     Low  
cufflinks 0.104        
cufflinks 0.05     Low  
cufflinks 0.369        

0 Strain