Gene : Bradi1g54305 B. distachyon v3.1
Defline:  (1 of 2) PTHR10108//PTHR10108:SF908 - METHYLTRANSFERASE Genomic Order:  6804
Name:  ? Bradi1g54305 Secondary Identifier:  ? PAC:32792892
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-2541 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g54305 0.5kb upstream 0.5kb upstream 11544 true Bd1: 52865957-52877500 Brachypodium distachyon
Bradi1g54305 0.5kb upstream 0.5kb upstream 500 false Bd1: 52865957-52866456 Brachypodium distachyon
Bradi1g54305 0.5kb downstream 0.5kb downstream 11544 true Bd1: 52866457-52878000 Brachypodium distachyon
Bradi1g54305 0.5kb downstream 0.5kb downstream 500 false Bd1: 52877501-52878000 Brachypodium distachyon
Bradi1g54305 1.0kb upstream 1.0kb upstream 12044 true Bd1: 52865457-52877500 Brachypodium distachyon
Bradi1g54305 1.0kb upstream 1.0kb upstream 1000 false Bd1: 52865457-52866456 Brachypodium distachyon
Bradi1g54305 1.0kb downstream 1.0kb downstream 12044 true Bd1: 52866457-52878500 Brachypodium distachyon
Bradi1g54305 1.0kb downstream 1.0kb downstream 1000 false Bd1: 52877501-52878500 Brachypodium distachyon
Bradi1g54305 2.0kb upstream 2.0kb upstream 13044 true Bd1: 52864457-52877500 Brachypodium distachyon
Bradi1g54305 2.0kb upstream 2.0kb upstream 2000 false Bd1: 52864457-52866456 Brachypodium distachyon
Bradi1g54305 2.0kb downstream 2.0kb downstream 13044 true Bd1: 52866457-52879500 Brachypodium distachyon
Bradi1g54305 2.0kb downstream 2.0kb downstream 2000 false Bd1: 52877501-52879500 Brachypodium distachyon
Bradi1g54305 5.0kb upstream 5.0kb upstream 16044 true Bd1: 52861457-52877500 Brachypodium distachyon
Bradi1g54305 5.0kb upstream 5.0kb upstream 5000 false Bd1: 52861457-52866456 Brachypodium distachyon
Bradi1g54305 5.0kb downstream 5.0kb downstream 16044 true Bd1: 52866457-52882500 Brachypodium distachyon
Bradi1g54305 5.0kb downstream 5.0kb downstream 5000 false Bd1: 52877501-52882500 Brachypodium distachyon
Bradi1g54305 10.0kb upstream 10.0kb upstream 21044 true Bd1: 52856457-52877500 Brachypodium distachyon
Bradi1g54305 10.0kb upstream 10.0kb upstream 10000 false Bd1: 52856457-52866456 Brachypodium distachyon
Bradi1g54305 10.0kb downstream 10.0kb downstream 21044 true Bd1: 52866457-52887500 Brachypodium distachyon
Bradi1g54305 10.0kb downstream 10.0kb downstream 10000 false Bd1: 52877501-52887500 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041479 5273 Angiosperm View MSA
124575415 5269 Grass View MSA
121345470 5274 Embryophyte View MSA
123426805 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.507        
cufflinks 7.464        
cufflinks 7.86        
cufflinks 7.961        
cufflinks 6.125       Low
cufflinks 8.325        
cufflinks 7.474        
cufflinks 5.134       Low
cufflinks 7.448        
cufflinks 7.231        
cufflinks 8.65     High  
cufflinks 7.385        
cufflinks 7.668     High  
cufflinks 7.48        
cufflinks 5.958       Low
cufflinks 6.243       Low
cufflinks 7.492        
cufflinks 9.154        
cufflinks 11.377       High
cufflinks 10.343        
cufflinks 11.908     High High
cufflinks 7.169        
cufflinks 5.918       Low
cufflinks 8.104        
cufflinks 8.698        
cufflinks 8.06        
cufflinks 9.633     High  
cufflinks 8.569        
cufflinks 7.71        
cufflinks 14.445     High High

0 Strain