Gene : Bradi1g56640 B. distachyon v3.1
Defline:  (1 of 1) PTHR11451//PTHR11451:SF6 - TRNA SYNTHETASE-RELATED // SUBFAMILY NOT NAMED Genomic Order:  7098
Name:  ? Bradi1g56640 Secondary Identifier:  ? PAC:32806321
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon TRNA-CHARGING-PWY Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g56640 0.5kb upstream 0.5kb upstream 5561 true Bd1: 55465321-55470881 Brachypodium distachyon
Bradi1g56640 0.5kb upstream 0.5kb upstream 500 false Bd1: 55470382-55470881 Brachypodium distachyon
Bradi1g56640 0.5kb downstream 0.5kb downstream 5561 true Bd1: 55464821-55470381 Brachypodium distachyon
Bradi1g56640 0.5kb downstream 0.5kb downstream 500 false Bd1: 55464821-55465320 Brachypodium distachyon
Bradi1g56640 1.0kb upstream 1.0kb upstream 6061 true Bd1: 55465321-55471381 Brachypodium distachyon
Bradi1g56640 1.0kb upstream 1.0kb upstream 1000 false Bd1: 55470382-55471381 Brachypodium distachyon
Bradi1g56640 1.0kb downstream 1.0kb downstream 6061 true Bd1: 55464321-55470381 Brachypodium distachyon
Bradi1g56640 1.0kb downstream 1.0kb downstream 1000 false Bd1: 55464321-55465320 Brachypodium distachyon
Bradi1g56640 2.0kb upstream 2.0kb upstream 7061 true Bd1: 55465321-55472381 Brachypodium distachyon
Bradi1g56640 2.0kb upstream 2.0kb upstream 2000 false Bd1: 55470382-55472381 Brachypodium distachyon
Bradi1g56640 2.0kb downstream 2.0kb downstream 7061 true Bd1: 55463321-55470381 Brachypodium distachyon
Bradi1g56640 2.0kb downstream 2.0kb downstream 2000 false Bd1: 55463321-55465320 Brachypodium distachyon
Bradi1g56640 5.0kb upstream 5.0kb upstream 10061 true Bd1: 55465321-55475381 Brachypodium distachyon
Bradi1g56640 5.0kb upstream 5.0kb upstream 5000 false Bd1: 55470382-55475381 Brachypodium distachyon
Bradi1g56640 5.0kb downstream 5.0kb downstream 10061 true Bd1: 55460321-55470381 Brachypodium distachyon
Bradi1g56640 5.0kb downstream 5.0kb downstream 5000 false Bd1: 55460321-55465320 Brachypodium distachyon
Bradi1g56640 10.0kb upstream 10.0kb upstream 15061 true Bd1: 55465321-55480381 Brachypodium distachyon
Bradi1g56640 10.0kb upstream 10.0kb upstream 10000 false Bd1: 55470382-55480381 Brachypodium distachyon
Bradi1g56640 10.0kb downstream 10.0kb downstream 15061 true Bd1: 55455321-55470381 Brachypodium distachyon
Bradi1g56640 10.0kb downstream 10.0kb downstream 10000 false Bd1: 55455321-55465320 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124581859 5269 Grass View MSA
122044069 5273 Angiosperm View MSA
121345199 5274 Embryophyte View MSA
123428629 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.015        
cufflinks 10.551     High High
cufflinks 9.41        
cufflinks 11.04     High High
cufflinks 6.063        
cufflinks 9.108        
cufflinks 8.644        
cufflinks 6.989        
cufflinks 7.613        
cufflinks 8.831        
cufflinks 5.785        
cufflinks 9.155     High  
cufflinks 5.368        
cufflinks 5.617        
cufflinks 7.878        
cufflinks 9.178        
cufflinks 7.214        
cufflinks 2.581       Low
cufflinks 3.998       Low
cufflinks 1.775       Low
cufflinks 4.441        
cufflinks 8.639        
cufflinks 6.645        
cufflinks 7.915        
cufflinks 8.822        
cufflinks 10.501       High
cufflinks 4.517        
cufflinks 8.451        
cufflinks 8.725        
cufflinks 8.471        

0 Strain