Gene : Bradi1g62110 B. distachyon v3.1
Defline:  (1 of 1) PTHR13247//PTHR13247:SF2 - TETRATRICOPEPTIDE REPEAT PROTEIN 11 TPR REPEAT PROTEIN 11 Genomic Order:  7865
Name:  ? Bradi1g62110 Secondary Identifier:  ? PAC:32798005
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g62110 0.5kb upstream 0.5kb upstream 4832 true Bd1: 61638179-61643010 Brachypodium distachyon
Bradi1g62110 0.5kb upstream 0.5kb upstream 500 false Bd1: 61638179-61638678 Brachypodium distachyon
Bradi1g62110 0.5kb downstream 0.5kb downstream 4832 true Bd1: 61638679-61643510 Brachypodium distachyon
Bradi1g62110 0.5kb downstream 0.5kb downstream 500 false Bd1: 61643011-61643510 Brachypodium distachyon
Bradi1g62110 1.0kb upstream 1.0kb upstream 5332 true Bd1: 61637679-61643010 Brachypodium distachyon
Bradi1g62110 1.0kb upstream 1.0kb upstream 1000 false Bd1: 61637679-61638678 Brachypodium distachyon
Bradi1g62110 1.0kb downstream 1.0kb downstream 5332 true Bd1: 61638679-61644010 Brachypodium distachyon
Bradi1g62110 1.0kb downstream 1.0kb downstream 1000 false Bd1: 61643011-61644010 Brachypodium distachyon
Bradi1g62110 2.0kb upstream 2.0kb upstream 6332 true Bd1: 61636679-61643010 Brachypodium distachyon
Bradi1g62110 2.0kb upstream 2.0kb upstream 2000 false Bd1: 61636679-61638678 Brachypodium distachyon
Bradi1g62110 2.0kb downstream 2.0kb downstream 6332 true Bd1: 61638679-61645010 Brachypodium distachyon
Bradi1g62110 2.0kb downstream 2.0kb downstream 2000 false Bd1: 61643011-61645010 Brachypodium distachyon
Bradi1g62110 5.0kb upstream 5.0kb upstream 9332 true Bd1: 61633679-61643010 Brachypodium distachyon
Bradi1g62110 5.0kb upstream 5.0kb upstream 5000 false Bd1: 61633679-61638678 Brachypodium distachyon
Bradi1g62110 5.0kb downstream 5.0kb downstream 9332 true Bd1: 61638679-61648010 Brachypodium distachyon
Bradi1g62110 5.0kb downstream 5.0kb downstream 5000 false Bd1: 61643011-61648010 Brachypodium distachyon
Bradi1g62110 10.0kb upstream 10.0kb upstream 14332 true Bd1: 61628679-61643010 Brachypodium distachyon
Bradi1g62110 10.0kb upstream 10.0kb upstream 10000 false Bd1: 61628679-61638678 Brachypodium distachyon
Bradi1g62110 10.0kb downstream 10.0kb downstream 14332 true Bd1: 61638679-61653010 Brachypodium distachyon
Bradi1g62110 10.0kb downstream 10.0kb downstream 10000 false Bd1: 61643011-61653010 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124577122 5269 Grass View MSA
122046203 5273 Angiosperm View MSA
123429111 5275 Viridiplantae View MSA
121347777 5274 Embryophyte View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.204     High  
cufflinks 8.971        
cufflinks 9.576        
cufflinks 11.95     High  
cufflinks 12.108     High  
cufflinks 7.708       Low
cufflinks 7.984       Low
cufflinks 8.494       Low
cufflinks 8.413       Low
cufflinks 17.982     High High
cufflinks 9.929     High  
cufflinks 8.36       Low
cufflinks 9.093     High  
cufflinks 10.822     High  
cufflinks 13.982     High  
cufflinks 7.07       Low
cufflinks 13.444     High  
cufflinks 9.483        
cufflinks 15.21     High  
cufflinks 25.758     High High
cufflinks 19.623     High High
cufflinks 8.896        
cufflinks 8.723        
cufflinks 8.645        
cufflinks 9.694     High  
cufflinks 17.39     High High
cufflinks 11.123     High  
cufflinks 14.53     High  
cufflinks 12.014     High  
cufflinks 13.115     High  

0 Strain