Gene : Bradi1g62950 B. distachyon v3.1
Defline:  (1 of 1) PTHR22904:SF169 - RNA POLYMERASE II-ASSOCIATED PROTEIN 3 Genomic Order:  7964
Name:  ? Bradi1g62950 Secondary Identifier:  ? PAC:32800843
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g62950 0.5kb upstream 0.5kb upstream 2467 true Bd1: 62369496-62371962 Brachypodium distachyon
Bradi1g62950 0.5kb upstream 0.5kb upstream 500 false Bd1: 62371463-62371962 Brachypodium distachyon
Bradi1g62950 0.5kb downstream 0.5kb downstream 2467 true Bd1: 62368996-62371462 Brachypodium distachyon
Bradi1g62950 0.5kb downstream 0.5kb downstream 500 false Bd1: 62368996-62369495 Brachypodium distachyon
Bradi1g62950 1.0kb upstream 1.0kb upstream 2967 true Bd1: 62369496-62372462 Brachypodium distachyon
Bradi1g62950 1.0kb upstream 1.0kb upstream 1000 false Bd1: 62371463-62372462 Brachypodium distachyon
Bradi1g62950 1.0kb downstream 1.0kb downstream 2967 true Bd1: 62368496-62371462 Brachypodium distachyon
Bradi1g62950 1.0kb downstream 1.0kb downstream 1000 false Bd1: 62368496-62369495 Brachypodium distachyon
Bradi1g62950 2.0kb upstream 2.0kb upstream 3967 true Bd1: 62369496-62373462 Brachypodium distachyon
Bradi1g62950 2.0kb upstream 2.0kb upstream 2000 false Bd1: 62371463-62373462 Brachypodium distachyon
Bradi1g62950 2.0kb downstream 2.0kb downstream 3967 true Bd1: 62367496-62371462 Brachypodium distachyon
Bradi1g62950 2.0kb downstream 2.0kb downstream 2000 false Bd1: 62367496-62369495 Brachypodium distachyon
Bradi1g62950 5.0kb upstream 5.0kb upstream 6967 true Bd1: 62369496-62376462 Brachypodium distachyon
Bradi1g62950 5.0kb upstream 5.0kb upstream 5000 false Bd1: 62371463-62376462 Brachypodium distachyon
Bradi1g62950 5.0kb downstream 5.0kb downstream 6967 true Bd1: 62364496-62371462 Brachypodium distachyon
Bradi1g62950 5.0kb downstream 5.0kb downstream 5000 false Bd1: 62364496-62369495 Brachypodium distachyon
Bradi1g62950 10.0kb upstream 10.0kb upstream 11967 true Bd1: 62369496-62381462 Brachypodium distachyon
Bradi1g62950 10.0kb upstream 10.0kb upstream 10000 false Bd1: 62371463-62381462 Brachypodium distachyon
Bradi1g62950 10.0kb downstream 10.0kb downstream 11967 true Bd1: 62359496-62371462 Brachypodium distachyon
Bradi1g62950 10.0kb downstream 10.0kb downstream 10000 false Bd1: 62359496-62369495 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026696 5273 Angiosperm View MSA
124575537 5269 Grass View MSA
123429169 5275 Viridiplantae View MSA
121348213 5274 Embryophyte View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 36.273     High  
cufflinks 29.858     High Low
cufflinks 50.219     High  
cufflinks 32.606     High  
cufflinks 43.034     High  
cufflinks 30.004     High Low
cufflinks 31.216     High  
cufflinks 37.532     High  
cufflinks 31.606     High  
cufflinks 59.071     High High
cufflinks 37.38     High  
cufflinks 33.35     High  
cufflinks 32.906     High  
cufflinks 33.616     High  
cufflinks 37.142     High  
cufflinks 35.158     High  
cufflinks 41.797     High  
cufflinks 45.575     High  
cufflinks 49.463     High  
cufflinks 58.996     High High
cufflinks 77.873     High High
cufflinks 48.559     High  
cufflinks 37.575     High  
cufflinks 34.042     High  
cufflinks 30.945     High  
cufflinks 54.82     High High
cufflinks 30.8     High  
cufflinks 54.082     High High
cufflinks 49.166     High  
cufflinks 64.327     High High

0 Strain