Gene : Bradi5g12820 B. distachyon v3.1
Defline:  (1 of 1) PTHR16056:SF2 - TESTIS-EXPRESSED SEQUENCE 10 PROTEIN HOMOLOG Genomic Order:  1396
Name:  ? Bradi5g12820 Secondary Identifier:  ? PAC:32809835
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi5g12820 0.5kb upstream 0.5kb upstream 11668 true Bd5: 16456643-16468310 Brachypodium distachyon
Bradi5g12820 0.5kb upstream 0.5kb upstream 500 false Bd5: 16467811-16468310 Brachypodium distachyon
Bradi5g12820 0.5kb downstream 0.5kb downstream 11668 true Bd5: 16456143-16467810 Brachypodium distachyon
Bradi5g12820 0.5kb downstream 0.5kb downstream 500 false Bd5: 16456143-16456642 Brachypodium distachyon
Bradi5g12820 1.0kb upstream 1.0kb upstream 12168 true Bd5: 16456643-16468810 Brachypodium distachyon
Bradi5g12820 1.0kb upstream 1.0kb upstream 1000 false Bd5: 16467811-16468810 Brachypodium distachyon
Bradi5g12820 1.0kb downstream 1.0kb downstream 12168 true Bd5: 16455643-16467810 Brachypodium distachyon
Bradi5g12820 1.0kb downstream 1.0kb downstream 1000 false Bd5: 16455643-16456642 Brachypodium distachyon
Bradi5g12820 2.0kb upstream 2.0kb upstream 13168 true Bd5: 16456643-16469810 Brachypodium distachyon
Bradi5g12820 2.0kb upstream 2.0kb upstream 2000 false Bd5: 16467811-16469810 Brachypodium distachyon
Bradi5g12820 2.0kb downstream 2.0kb downstream 13168 true Bd5: 16454643-16467810 Brachypodium distachyon
Bradi5g12820 2.0kb downstream 2.0kb downstream 2000 false Bd5: 16454643-16456642 Brachypodium distachyon
Bradi5g12820 5.0kb upstream 5.0kb upstream 16168 true Bd5: 16456643-16472810 Brachypodium distachyon
Bradi5g12820 5.0kb upstream 5.0kb upstream 5000 false Bd5: 16467811-16472810 Brachypodium distachyon
Bradi5g12820 5.0kb downstream 5.0kb downstream 16168 true Bd5: 16451643-16467810 Brachypodium distachyon
Bradi5g12820 5.0kb downstream 5.0kb downstream 5000 false Bd5: 16451643-16456642 Brachypodium distachyon
Bradi5g12820 10.0kb upstream 10.0kb upstream 21168 true Bd5: 16456643-16477810 Brachypodium distachyon
Bradi5g12820 10.0kb upstream 10.0kb upstream 10000 false Bd5: 16467811-16477810 Brachypodium distachyon
Bradi5g12820 10.0kb downstream 10.0kb downstream 21168 true Bd5: 16446643-16467810 Brachypodium distachyon
Bradi5g12820 10.0kb downstream 10.0kb downstream 10000 false Bd5: 16446643-16456642 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029601 5273 Angiosperm View MSA
124572273 5269 Grass View MSA
121346343 5274 Embryophyte View MSA
123424675 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.408        
cufflinks 0.8       High
cufflinks 0.805       High
cufflinks 0.573        
cufflinks 0.158       Low
cufflinks 0.66        
cufflinks 0.64        
cufflinks 0.528        
cufflinks 0.607        
cufflinks 0.441        
cufflinks 0.486        
cufflinks 0.542        
cufflinks 0.339        
cufflinks 0.344        
cufflinks 0.279        
cufflinks 0.687        
cufflinks 0.239        
cufflinks 0.992       High
cufflinks 0.279        
cufflinks 0.052     Low Low
cufflinks 0.279        
cufflinks 0.708        
cufflinks 0.477        
cufflinks 0.507        
cufflinks 0.567        
cufflinks 0.634        
cufflinks 0.462        
cufflinks 0.582        
cufflinks 0.596        
cufflinks 0.557        

0 Strain