Gene : Bradi1g64540 B. distachyon v3.1
Defline:  (1 of 1) PTHR33921:SF2 - CALVIN CYCLE PROTEIN CP12-1, CHLOROPLASTIC-RELATED Genomic Order:  8164
Name:  ? Bradi1g64540 Secondary Identifier:  ? PAC:32801432
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g64540 0.5kb upstream 0.5kb upstream 1356 true Bd1: 63937910-63939265 Brachypodium distachyon
Bradi1g64540 0.5kb upstream 0.5kb upstream 500 false Bd1: 63938766-63939265 Brachypodium distachyon
Bradi1g64540 0.5kb downstream 0.5kb downstream 1356 true Bd1: 63937410-63938765 Brachypodium distachyon
Bradi1g64540 0.5kb downstream 0.5kb downstream 500 false Bd1: 63937410-63937909 Brachypodium distachyon
Bradi1g64540 1.0kb upstream 1.0kb upstream 1856 true Bd1: 63937910-63939765 Brachypodium distachyon
Bradi1g64540 1.0kb upstream 1.0kb upstream 1000 false Bd1: 63938766-63939765 Brachypodium distachyon
Bradi1g64540 1.0kb downstream 1.0kb downstream 1856 true Bd1: 63936910-63938765 Brachypodium distachyon
Bradi1g64540 1.0kb downstream 1.0kb downstream 1000 false Bd1: 63936910-63937909 Brachypodium distachyon
Bradi1g64540 2.0kb upstream 2.0kb upstream 2856 true Bd1: 63937910-63940765 Brachypodium distachyon
Bradi1g64540 2.0kb upstream 2.0kb upstream 2000 false Bd1: 63938766-63940765 Brachypodium distachyon
Bradi1g64540 2.0kb downstream 2.0kb downstream 2856 true Bd1: 63935910-63938765 Brachypodium distachyon
Bradi1g64540 2.0kb downstream 2.0kb downstream 2000 false Bd1: 63935910-63937909 Brachypodium distachyon
Bradi1g64540 5.0kb upstream 5.0kb upstream 5856 true Bd1: 63937910-63943765 Brachypodium distachyon
Bradi1g64540 5.0kb upstream 5.0kb upstream 5000 false Bd1: 63938766-63943765 Brachypodium distachyon
Bradi1g64540 5.0kb downstream 5.0kb downstream 5856 true Bd1: 63932910-63938765 Brachypodium distachyon
Bradi1g64540 5.0kb downstream 5.0kb downstream 5000 false Bd1: 63932910-63937909 Brachypodium distachyon
Bradi1g64540 10.0kb upstream 10.0kb upstream 10856 true Bd1: 63937910-63948765 Brachypodium distachyon
Bradi1g64540 10.0kb upstream 10.0kb upstream 10000 false Bd1: 63938766-63948765 Brachypodium distachyon
Bradi1g64540 10.0kb downstream 10.0kb downstream 10856 true Bd1: 63927910-63938765 Brachypodium distachyon
Bradi1g64540 10.0kb downstream 10.0kb downstream 10000 false Bd1: 63927910-63937909 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124571064 5269 Grass View MSA
122046618 5273 Angiosperm View MSA
121351753 5274 Embryophyte View MSA
123424034 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 170.614     High  
cufflinks 124.573     High  
cufflinks 99.844     High  
cufflinks 161.73     High  
cufflinks 130.036     High  
cufflinks 119.804     High  
cufflinks 130.127     High  
cufflinks 118.15     High  
cufflinks 128.258     High  
cufflinks 255.724     High High
cufflinks 83.068     High  
cufflinks 82.24     High  
cufflinks 92.107     High  
cufflinks 96.463     High  
cufflinks 124.265     High  
cufflinks 104.854     High  
cufflinks 199.108     High  
cufflinks 8.831       Low
cufflinks 157.746     High  
cufflinks 100.786     High  
cufflinks 228.579     High  
cufflinks 112.969     High  
cufflinks 138.657     High  
cufflinks 135.891     High  
cufflinks 190.223     High  
cufflinks 132.147     High  
cufflinks 59.716     High  
cufflinks 196.838     High  
cufflinks 222.426     High  
cufflinks 105.459     High  

0 Strain