Gene : Bradi5g12150 B. distachyon v3.1
Defline:  (1 of 1) PTHR21649:SF2 - CHLOROPHYLL A-B BINDING PROTEIN Genomic Order:  1306
Name:  ? Bradi5g12150 Secondary Identifier:  ? PAC:32809762
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi5g12150 0.5kb upstream 0.5kb upstream 1776 true Bd5: 15762852-15764627 Brachypodium distachyon
Bradi5g12150 0.5kb upstream 0.5kb upstream 500 false Bd5: 15764128-15764627 Brachypodium distachyon
Bradi5g12150 0.5kb downstream 0.5kb downstream 1776 true Bd5: 15762352-15764127 Brachypodium distachyon
Bradi5g12150 0.5kb downstream 0.5kb downstream 500 false Bd5: 15762352-15762851 Brachypodium distachyon
Bradi5g12150 1.0kb upstream 1.0kb upstream 2276 true Bd5: 15762852-15765127 Brachypodium distachyon
Bradi5g12150 1.0kb upstream 1.0kb upstream 1000 false Bd5: 15764128-15765127 Brachypodium distachyon
Bradi5g12150 1.0kb downstream 1.0kb downstream 2276 true Bd5: 15761852-15764127 Brachypodium distachyon
Bradi5g12150 1.0kb downstream 1.0kb downstream 1000 false Bd5: 15761852-15762851 Brachypodium distachyon
Bradi5g12150 2.0kb upstream 2.0kb upstream 3276 true Bd5: 15762852-15766127 Brachypodium distachyon
Bradi5g12150 2.0kb upstream 2.0kb upstream 2000 false Bd5: 15764128-15766127 Brachypodium distachyon
Bradi5g12150 2.0kb downstream 2.0kb downstream 3276 true Bd5: 15760852-15764127 Brachypodium distachyon
Bradi5g12150 2.0kb downstream 2.0kb downstream 2000 false Bd5: 15760852-15762851 Brachypodium distachyon
Bradi5g12150 5.0kb upstream 5.0kb upstream 6276 true Bd5: 15762852-15769127 Brachypodium distachyon
Bradi5g12150 5.0kb upstream 5.0kb upstream 5000 false Bd5: 15764128-15769127 Brachypodium distachyon
Bradi5g12150 5.0kb downstream 5.0kb downstream 6276 true Bd5: 15757852-15764127 Brachypodium distachyon
Bradi5g12150 5.0kb downstream 5.0kb downstream 5000 false Bd5: 15757852-15762851 Brachypodium distachyon
Bradi5g12150 10.0kb upstream 10.0kb upstream 11276 true Bd5: 15762852-15774127 Brachypodium distachyon
Bradi5g12150 10.0kb upstream 10.0kb upstream 10000 false Bd5: 15764128-15774127 Brachypodium distachyon
Bradi5g12150 10.0kb downstream 10.0kb downstream 11276 true Bd5: 15752852-15764127 Brachypodium distachyon
Bradi5g12150 10.0kb downstream 10.0kb downstream 10000 false Bd5: 15752852-15762851 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124575789 5269 Grass View MSA
122042531 5273 Angiosperm View MSA
121350849 5274 Embryophyte View MSA
123381903 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 974.471     High  
cufflinks 528.101     High  
cufflinks 77.847     High Low
cufflinks 370.89     High  
cufflinks 874.759     High  
cufflinks 1379.525     High  
cufflinks 1380.062     High  
cufflinks 1536.006     High  
cufflinks 1634.023     High  
cufflinks 1448.787     High  
cufflinks 1231.344     High  
cufflinks 893.236     High  
cufflinks 2012.839     High  
cufflinks 2338.156     High High
cufflinks 949.567     High  
cufflinks 1225.45     High  
cufflinks 1728.503     High  
cufflinks 14.266     High Low
cufflinks 608.342     High  
cufflinks 327.938     High  
cufflinks 1105.113     High  
cufflinks 799.778     High  
cufflinks 1622.001     High  
cufflinks 1757.92     High  
cufflinks 1811.681     High  
cufflinks 74.453     High Low
cufflinks 2071.974     High High
cufflinks 188.955     High  
cufflinks 549.606     High  
cufflinks 542.883     High  

0 Strain