Gene : Bradi1g70200 B. distachyon v3.1
Defline:  (1 of 1) PTHR11088//PTHR11088:SF26 - TRNA DELTA 2 -ISOPENTENYLPYROPHOSPHATE TRANSFERASE-RELATED // TRNA DIMETHYLALLYLTRANSFERASE 2 Genomic Order:  8882
Name:  ? Bradi1g70200 Secondary Identifier:  ? PAC:32791781
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-2781 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g70200 0.5kb upstream 0.5kb upstream 3534 true Bd1: 68830978-68834511 Brachypodium distachyon
Bradi1g70200 0.5kb upstream 0.5kb upstream 500 false Bd1: 68834012-68834511 Brachypodium distachyon
Bradi1g70200 0.5kb downstream 0.5kb downstream 3534 true Bd1: 68830478-68834011 Brachypodium distachyon
Bradi1g70200 0.5kb downstream 0.5kb downstream 500 false Bd1: 68830478-68830977 Brachypodium distachyon
Bradi1g70200 1.0kb upstream 1.0kb upstream 4034 true Bd1: 68830978-68835011 Brachypodium distachyon
Bradi1g70200 1.0kb upstream 1.0kb upstream 1000 false Bd1: 68834012-68835011 Brachypodium distachyon
Bradi1g70200 1.0kb downstream 1.0kb downstream 4034 true Bd1: 68829978-68834011 Brachypodium distachyon
Bradi1g70200 1.0kb downstream 1.0kb downstream 1000 false Bd1: 68829978-68830977 Brachypodium distachyon
Bradi1g70200 2.0kb upstream 2.0kb upstream 5034 true Bd1: 68830978-68836011 Brachypodium distachyon
Bradi1g70200 2.0kb upstream 2.0kb upstream 2000 false Bd1: 68834012-68836011 Brachypodium distachyon
Bradi1g70200 2.0kb downstream 2.0kb downstream 5034 true Bd1: 68828978-68834011 Brachypodium distachyon
Bradi1g70200 2.0kb downstream 2.0kb downstream 2000 false Bd1: 68828978-68830977 Brachypodium distachyon
Bradi1g70200 5.0kb upstream 5.0kb upstream 8034 true Bd1: 68830978-68839011 Brachypodium distachyon
Bradi1g70200 5.0kb upstream 5.0kb upstream 5000 false Bd1: 68834012-68839011 Brachypodium distachyon
Bradi1g70200 5.0kb downstream 5.0kb downstream 8034 true Bd1: 68825978-68834011 Brachypodium distachyon
Bradi1g70200 5.0kb downstream 5.0kb downstream 5000 false Bd1: 68825978-68830977 Brachypodium distachyon
Bradi1g70200 10.0kb upstream 10.0kb upstream 13034 true Bd1: 68830978-68844011 Brachypodium distachyon
Bradi1g70200 10.0kb upstream 10.0kb upstream 10000 false Bd1: 68834012-68844011 Brachypodium distachyon
Bradi1g70200 10.0kb downstream 10.0kb downstream 13034 true Bd1: 68820978-68834011 Brachypodium distachyon
Bradi1g70200 10.0kb downstream 10.0kb downstream 10000 false Bd1: 68820978-68830977 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124578987 5269 Grass View MSA
122043118 5273 Angiosperm View MSA
121350682 5274 Embryophyte View MSA
123428607 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.327       Low
cufflinks 0.673        
cufflinks 0.866        
cufflinks 0.699        
cufflinks 0.435        
cufflinks 0.738        
cufflinks 0.643        
cufflinks 0.591        
cufflinks 0.666        
cufflinks 0.749        
cufflinks 0.561        
cufflinks 0.537        
cufflinks 0.528        
cufflinks 0.392       Low
cufflinks 0.563        
cufflinks 0.616        
cufflinks 0.572        
cufflinks 1.154       High
cufflinks 0.39       Low
cufflinks 0.34       Low
cufflinks 0.719        
cufflinks 0.814        
cufflinks 0.534        
cufflinks 0.542        
cufflinks 0.519        
cufflinks 0.975       High
cufflinks 0.739        
cufflinks 0.956       High
cufflinks 0.813        
cufflinks 0.725        

0 Strain