Gene : Bradi1g78082 B. distachyon v3.1
Defline:  (1 of 5) PTHR33180:SF4 - PHOTOSYSTEM II CP43 CHLOROPHYLL APOPROTEIN Genomic Order:  9804
Name:  ? Bradi1g78082 Secondary Identifier:  ? PAC:32800067
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g78082 0.5kb upstream 0.5kb upstream 1926 true Bd1: 74395341-74397266 Brachypodium distachyon
Bradi1g78082 0.5kb upstream 0.5kb upstream 500 false Bd1: 74395341-74395840 Brachypodium distachyon
Bradi1g78082 0.5kb downstream 0.5kb downstream 1926 true Bd1: 74395841-74397766 Brachypodium distachyon
Bradi1g78082 0.5kb downstream 0.5kb downstream 500 false Bd1: 74397267-74397766 Brachypodium distachyon
Bradi1g78082 1.0kb upstream 1.0kb upstream 2426 true Bd1: 74394841-74397266 Brachypodium distachyon
Bradi1g78082 1.0kb upstream 1.0kb upstream 1000 false Bd1: 74394841-74395840 Brachypodium distachyon
Bradi1g78082 1.0kb downstream 1.0kb downstream 2426 true Bd1: 74395841-74398266 Brachypodium distachyon
Bradi1g78082 1.0kb downstream 1.0kb downstream 1000 false Bd1: 74397267-74398266 Brachypodium distachyon
Bradi1g78082 2.0kb upstream 2.0kb upstream 3426 true Bd1: 74393841-74397266 Brachypodium distachyon
Bradi1g78082 2.0kb upstream 2.0kb upstream 2000 false Bd1: 74393841-74395840 Brachypodium distachyon
Bradi1g78082 2.0kb downstream 2.0kb downstream 3426 true Bd1: 74395841-74399266 Brachypodium distachyon
Bradi1g78082 2.0kb downstream 2.0kb downstream 2000 false Bd1: 74397267-74399266 Brachypodium distachyon
Bradi1g78082 5.0kb upstream 5.0kb upstream 6426 true Bd1: 74390841-74397266 Brachypodium distachyon
Bradi1g78082 5.0kb upstream 5.0kb upstream 5000 false Bd1: 74390841-74395840 Brachypodium distachyon
Bradi1g78082 5.0kb downstream 5.0kb downstream 6426 true Bd1: 74395841-74402266 Brachypodium distachyon
Bradi1g78082 5.0kb downstream 5.0kb downstream 5000 false Bd1: 74397267-74402266 Brachypodium distachyon
Bradi1g78082 10.0kb upstream 10.0kb upstream 11426 true Bd1: 74385841-74397266 Brachypodium distachyon
Bradi1g78082 10.0kb upstream 10.0kb upstream 10000 false Bd1: 74385841-74395840 Brachypodium distachyon
Bradi1g78082 10.0kb downstream 10.0kb downstream 11426 true Bd1: 74395841-74407266 Brachypodium distachyon
Bradi1g78082 10.0kb downstream 10.0kb downstream 10000 false Bd1: 74397267-74407266 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124591124 5269 Grass View MSA
122051576 5273 Angiosperm View MSA
123428978 5275 Viridiplantae View MSA
121350250 5274 Embryophyte View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.01     Low Low
cufflinks 0.016     Low  
cufflinks 0.009     Low Low
cufflinks 0.02     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.012     Low  
cufflinks 0.009     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.035     Low High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.023     Low  
cufflinks 0.024     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.015     Low  
cufflinks 0.013     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.027     Low High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.012     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.023     Low  
cufflinks 0.019     Low  
cufflinks 0.0     Not Expressed Not Expressed

0 Strain