Gene : Bradi5g08235 B. distachyon v3.1
Defline:  (1 of 2) 1.2.4.2 - Oxoglutarate dehydrogenase (succinyl-transferring) / Oxoglutarate dehydrogenase (lipoamide) Genomic Order:  777
Name:  ? Bradi5g08235 Secondary Identifier:  ? PAC:32808000
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-5084 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi5g08235 0.5kb upstream 0.5kb upstream 7064 true Bd5: 10893634-10900697 Brachypodium distachyon
Bradi5g08235 0.5kb upstream 0.5kb upstream 500 false Bd5: 10893634-10894133 Brachypodium distachyon
Bradi5g08235 0.5kb downstream 0.5kb downstream 7064 true Bd5: 10894134-10901197 Brachypodium distachyon
Bradi5g08235 0.5kb downstream 0.5kb downstream 500 false Bd5: 10900698-10901197 Brachypodium distachyon
Bradi5g08235 1.0kb upstream 1.0kb upstream 7564 true Bd5: 10893134-10900697 Brachypodium distachyon
Bradi5g08235 1.0kb upstream 1.0kb upstream 1000 false Bd5: 10893134-10894133 Brachypodium distachyon
Bradi5g08235 1.0kb downstream 1.0kb downstream 7564 true Bd5: 10894134-10901697 Brachypodium distachyon
Bradi5g08235 1.0kb downstream 1.0kb downstream 1000 false Bd5: 10900698-10901697 Brachypodium distachyon
Bradi5g08235 2.0kb upstream 2.0kb upstream 8564 true Bd5: 10892134-10900697 Brachypodium distachyon
Bradi5g08235 2.0kb upstream 2.0kb upstream 2000 false Bd5: 10892134-10894133 Brachypodium distachyon
Bradi5g08235 2.0kb downstream 2.0kb downstream 8564 true Bd5: 10894134-10902697 Brachypodium distachyon
Bradi5g08235 2.0kb downstream 2.0kb downstream 2000 false Bd5: 10900698-10902697 Brachypodium distachyon
Bradi5g08235 5.0kb upstream 5.0kb upstream 11564 true Bd5: 10889134-10900697 Brachypodium distachyon
Bradi5g08235 5.0kb upstream 5.0kb upstream 5000 false Bd5: 10889134-10894133 Brachypodium distachyon
Bradi5g08235 5.0kb downstream 5.0kb downstream 11564 true Bd5: 10894134-10905697 Brachypodium distachyon
Bradi5g08235 5.0kb downstream 5.0kb downstream 5000 false Bd5: 10900698-10905697 Brachypodium distachyon
Bradi5g08235 10.0kb upstream 10.0kb upstream 16564 true Bd5: 10884134-10900697 Brachypodium distachyon
Bradi5g08235 10.0kb upstream 10.0kb upstream 10000 false Bd5: 10884134-10894133 Brachypodium distachyon
Bradi5g08235 10.0kb downstream 10.0kb downstream 16564 true Bd5: 10894134-10910697 Brachypodium distachyon
Bradi5g08235 10.0kb downstream 10.0kb downstream 10000 false Bd5: 10900698-10910697 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124575001 5269 Grass View MSA
122044869 5273 Angiosperm View MSA
121344749 5274 Embryophyte View MSA
123424102 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.838     High  
cufflinks 15.272     High  
cufflinks 15.451     High  
cufflinks 12.912     High  
cufflinks 7.231       Low
cufflinks 13.31     High  
cufflinks 12.598     High  
cufflinks 12.102     High  
cufflinks 12.542     High  
cufflinks 8.683        
cufflinks 13.315     High  
cufflinks 16.581     High  
cufflinks 12.739     High  
cufflinks 10.912     High  
cufflinks 13.4     High  
cufflinks 14.228     High  
cufflinks 7.316       Low
cufflinks 17.091     High High
cufflinks 5.508       Low
cufflinks 4.755       Low
cufflinks 10.923        
cufflinks 13.826     High  
cufflinks 12.455     High  
cufflinks 12.511     High  
cufflinks 10.684     High  
cufflinks 13.787     High  
cufflinks 13.379     High  
cufflinks 12.446     High  
cufflinks 12.43     High  
cufflinks 15.367     High  

0 Strain