Gene : Bradi5g05921 B. distachyon v3.1
Defline:  (1 of 1) PTHR21402:SF10 - U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 48 KDA PROTEIN Genomic Order:  604
Name:  ? Bradi5g05921 Secondary Identifier:  ? PAC:32807861
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi5g05921 0.5kb upstream 0.5kb upstream 6920 true Bd5: 7543534-7550453 Brachypodium distachyon
Bradi5g05921 0.5kb upstream 0.5kb upstream 500 false Bd5: 7543534-7544033 Brachypodium distachyon
Bradi5g05921 0.5kb downstream 0.5kb downstream 6920 true Bd5: 7544034-7550953 Brachypodium distachyon
Bradi5g05921 0.5kb downstream 0.5kb downstream 500 false Bd5: 7550454-7550953 Brachypodium distachyon
Bradi5g05921 1.0kb upstream 1.0kb upstream 7420 true Bd5: 7543034-7550453 Brachypodium distachyon
Bradi5g05921 1.0kb upstream 1.0kb upstream 1000 false Bd5: 7543034-7544033 Brachypodium distachyon
Bradi5g05921 1.0kb downstream 1.0kb downstream 7420 true Bd5: 7544034-7551453 Brachypodium distachyon
Bradi5g05921 1.0kb downstream 1.0kb downstream 1000 false Bd5: 7550454-7551453 Brachypodium distachyon
Bradi5g05921 2.0kb upstream 2.0kb upstream 8420 true Bd5: 7542034-7550453 Brachypodium distachyon
Bradi5g05921 2.0kb upstream 2.0kb upstream 2000 false Bd5: 7542034-7544033 Brachypodium distachyon
Bradi5g05921 2.0kb downstream 2.0kb downstream 8420 true Bd5: 7544034-7552453 Brachypodium distachyon
Bradi5g05921 2.0kb downstream 2.0kb downstream 2000 false Bd5: 7550454-7552453 Brachypodium distachyon
Bradi5g05921 5.0kb upstream 5.0kb upstream 11420 true Bd5: 7539034-7550453 Brachypodium distachyon
Bradi5g05921 5.0kb upstream 5.0kb upstream 5000 false Bd5: 7539034-7544033 Brachypodium distachyon
Bradi5g05921 5.0kb downstream 5.0kb downstream 11420 true Bd5: 7544034-7555453 Brachypodium distachyon
Bradi5g05921 5.0kb downstream 5.0kb downstream 5000 false Bd5: 7550454-7555453 Brachypodium distachyon
Bradi5g05921 10.0kb upstream 10.0kb upstream 16420 true Bd5: 7534034-7550453 Brachypodium distachyon
Bradi5g05921 10.0kb upstream 10.0kb upstream 10000 false Bd5: 7534034-7544033 Brachypodium distachyon
Bradi5g05921 10.0kb downstream 10.0kb downstream 16420 true Bd5: 7544034-7560453 Brachypodium distachyon
Bradi5g05921 10.0kb downstream 10.0kb downstream 10000 false Bd5: 7550454-7560453 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124580845 5269 Grass View MSA
122044714 5273 Angiosperm View MSA
121344837 5274 Embryophyte View MSA
123380110 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.498        
cufflinks 1.026        
cufflinks 1.07        
cufflinks 0.942        
cufflinks 0.301       Low
cufflinks 0.925        
cufflinks 0.834        
cufflinks 0.726        
cufflinks 0.85        
cufflinks 0.617        
cufflinks 1.008        
cufflinks 0.996        
cufflinks 0.798        
cufflinks 0.803        
cufflinks 0.637        
cufflinks 0.912        
cufflinks 0.764        
cufflinks 1.053        
cufflinks 0.617        
cufflinks 0.103     Low Low
cufflinks 0.912        
cufflinks 1.074        
cufflinks 0.788        
cufflinks 0.759        
cufflinks 0.796        
cufflinks 0.987        
cufflinks 1.004        
cufflinks 0.928        
cufflinks 0.964        
cufflinks 1.029        

0 Strain