Gene : Bradi2g01100 B. distachyon v3.1
Defline:  (1 of 1) PTHR23315:SF65 - ARM REPEAT SUPERFAMILY PROTEIN Genomic Order:  124
Name:  ? Bradi2g01100 Secondary Identifier:  ? PAC:32771551
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-7511 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g01100 0.5kb upstream 0.5kb upstream 4091 true Bd2: 675574-679664 Brachypodium distachyon
Bradi2g01100 0.5kb upstream 0.5kb upstream 500 false Bd2: 679165-679664 Brachypodium distachyon
Bradi2g01100 0.5kb downstream 0.5kb downstream 4091 true Bd2: 675074-679164 Brachypodium distachyon
Bradi2g01100 0.5kb downstream 0.5kb downstream 500 false Bd2: 675074-675573 Brachypodium distachyon
Bradi2g01100 1.0kb upstream 1.0kb upstream 4591 true Bd2: 675574-680164 Brachypodium distachyon
Bradi2g01100 1.0kb upstream 1.0kb upstream 1000 false Bd2: 679165-680164 Brachypodium distachyon
Bradi2g01100 1.0kb downstream 1.0kb downstream 4591 true Bd2: 674574-679164 Brachypodium distachyon
Bradi2g01100 1.0kb downstream 1.0kb downstream 1000 false Bd2: 674574-675573 Brachypodium distachyon
Bradi2g01100 2.0kb upstream 2.0kb upstream 5591 true Bd2: 675574-681164 Brachypodium distachyon
Bradi2g01100 2.0kb upstream 2.0kb upstream 2000 false Bd2: 679165-681164 Brachypodium distachyon
Bradi2g01100 2.0kb downstream 2.0kb downstream 5591 true Bd2: 673574-679164 Brachypodium distachyon
Bradi2g01100 2.0kb downstream 2.0kb downstream 2000 false Bd2: 673574-675573 Brachypodium distachyon
Bradi2g01100 5.0kb upstream 5.0kb upstream 8591 true Bd2: 675574-684164 Brachypodium distachyon
Bradi2g01100 5.0kb upstream 5.0kb upstream 5000 false Bd2: 679165-684164 Brachypodium distachyon
Bradi2g01100 5.0kb downstream 5.0kb downstream 8591 true Bd2: 670574-679164 Brachypodium distachyon
Bradi2g01100 5.0kb downstream 5.0kb downstream 5000 false Bd2: 670574-675573 Brachypodium distachyon
Bradi2g01100 10.0kb upstream 10.0kb upstream 13591 true Bd2: 675574-689164 Brachypodium distachyon
Bradi2g01100 10.0kb upstream 10.0kb upstream 10000 false Bd2: 679165-689164 Brachypodium distachyon
Bradi2g01100 10.0kb downstream 10.0kb downstream 13591 true Bd2: 665574-679164 Brachypodium distachyon
Bradi2g01100 10.0kb downstream 10.0kb downstream 10000 false Bd2: 665574-675573 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124580841 5269 Grass View MSA
122044762 5273 Angiosperm View MSA
121310337 5274 Embryophyte View MSA
123347849 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.108     High High
cufflinks 5.208       Low
cufflinks 8.97        
cufflinks 5.948       Low
cufflinks 12.859     High  
cufflinks 7.451        
cufflinks 5.68       Low
cufflinks 7.242        
cufflinks 8.366        
cufflinks 13.47     High  
cufflinks 9.772     High  
cufflinks 4.526       Low
cufflinks 8.904     High  
cufflinks 10.401     High  
cufflinks 11.106     High  
cufflinks 5.407       Low
cufflinks 9.327        
cufflinks 11.56     High  
cufflinks 8.828        
cufflinks 25.469     High High
cufflinks 13.128     High  
cufflinks 9.775        
cufflinks 8.005        
cufflinks 8.805        
cufflinks 8.272        
cufflinks 10.114        
cufflinks 13.803     High  
cufflinks 11.64     High  
cufflinks 11.702     High  
cufflinks 6.911        

0 Strain