Gene : Bradi5g03162 B. distachyon v3.1
Defline:  (1 of 19) PF04195 - Putative gypsy type transposon (Transposase_28) Genomic Order:  365
Name:  ? Bradi5g03162 Secondary Identifier:  ? PAC:32809664
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi5g03162 0.5kb upstream 0.5kb upstream 2984 true Bd5: 3637315-3640298 Brachypodium distachyon
Bradi5g03162 0.5kb upstream 0.5kb upstream 500 false Bd5: 3639799-3640298 Brachypodium distachyon
Bradi5g03162 0.5kb downstream 0.5kb downstream 2984 true Bd5: 3636815-3639798 Brachypodium distachyon
Bradi5g03162 0.5kb downstream 0.5kb downstream 500 false Bd5: 3636815-3637314 Brachypodium distachyon
Bradi5g03162 1.0kb upstream 1.0kb upstream 3484 true Bd5: 3637315-3640798 Brachypodium distachyon
Bradi5g03162 1.0kb upstream 1.0kb upstream 1000 false Bd5: 3639799-3640798 Brachypodium distachyon
Bradi5g03162 1.0kb downstream 1.0kb downstream 3484 true Bd5: 3636315-3639798 Brachypodium distachyon
Bradi5g03162 1.0kb downstream 1.0kb downstream 1000 false Bd5: 3636315-3637314 Brachypodium distachyon
Bradi5g03162 2.0kb upstream 2.0kb upstream 4484 true Bd5: 3637315-3641798 Brachypodium distachyon
Bradi5g03162 2.0kb upstream 2.0kb upstream 2000 false Bd5: 3639799-3641798 Brachypodium distachyon
Bradi5g03162 2.0kb downstream 2.0kb downstream 4484 true Bd5: 3635315-3639798 Brachypodium distachyon
Bradi5g03162 2.0kb downstream 2.0kb downstream 2000 false Bd5: 3635315-3637314 Brachypodium distachyon
Bradi5g03162 5.0kb upstream 5.0kb upstream 7484 true Bd5: 3637315-3644798 Brachypodium distachyon
Bradi5g03162 5.0kb upstream 5.0kb upstream 5000 false Bd5: 3639799-3644798 Brachypodium distachyon
Bradi5g03162 5.0kb downstream 5.0kb downstream 7484 true Bd5: 3632315-3639798 Brachypodium distachyon
Bradi5g03162 5.0kb downstream 5.0kb downstream 5000 false Bd5: 3632315-3637314 Brachypodium distachyon
Bradi5g03162 10.0kb upstream 10.0kb upstream 12484 true Bd5: 3637315-3649798 Brachypodium distachyon
Bradi5g03162 10.0kb upstream 10.0kb upstream 10000 false Bd5: 3639799-3649798 Brachypodium distachyon
Bradi5g03162 10.0kb downstream 10.0kb downstream 12484 true Bd5: 3627315-3639798 Brachypodium distachyon
Bradi5g03162 10.0kb downstream 10.0kb downstream 10000 false Bd5: 3627315-3637314 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121996241 5273 Angiosperm View MSA
124591012 5269 Grass View MSA
121266409 5274 Embryophyte View MSA
123304751 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain