Gene : Bradi2g09170 B. distachyon v3.1
Defline:  (1 of 1) K12862 - pleiotropic regulator 1 (PLRG1, PRL1, PRP46) Genomic Order:  1180
Name:  ? Bradi2g09170 Secondary Identifier:  ? PAC:32781618
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g09170 0.5kb upstream 0.5kb upstream 6211 true Bd2: 7448718-7454928 Brachypodium distachyon
Bradi2g09170 0.5kb upstream 0.5kb upstream 500 false Bd2: 7448718-7449217 Brachypodium distachyon
Bradi2g09170 0.5kb downstream 0.5kb downstream 6211 true Bd2: 7449218-7455428 Brachypodium distachyon
Bradi2g09170 0.5kb downstream 0.5kb downstream 500 false Bd2: 7454929-7455428 Brachypodium distachyon
Bradi2g09170 1.0kb upstream 1.0kb upstream 6711 true Bd2: 7448218-7454928 Brachypodium distachyon
Bradi2g09170 1.0kb upstream 1.0kb upstream 1000 false Bd2: 7448218-7449217 Brachypodium distachyon
Bradi2g09170 1.0kb downstream 1.0kb downstream 6711 true Bd2: 7449218-7455928 Brachypodium distachyon
Bradi2g09170 1.0kb downstream 1.0kb downstream 1000 false Bd2: 7454929-7455928 Brachypodium distachyon
Bradi2g09170 2.0kb upstream 2.0kb upstream 7711 true Bd2: 7447218-7454928 Brachypodium distachyon
Bradi2g09170 2.0kb upstream 2.0kb upstream 2000 false Bd2: 7447218-7449217 Brachypodium distachyon
Bradi2g09170 2.0kb downstream 2.0kb downstream 7711 true Bd2: 7449218-7456928 Brachypodium distachyon
Bradi2g09170 2.0kb downstream 2.0kb downstream 2000 false Bd2: 7454929-7456928 Brachypodium distachyon
Bradi2g09170 5.0kb upstream 5.0kb upstream 10711 true Bd2: 7444218-7454928 Brachypodium distachyon
Bradi2g09170 5.0kb upstream 5.0kb upstream 5000 false Bd2: 7444218-7449217 Brachypodium distachyon
Bradi2g09170 5.0kb downstream 5.0kb downstream 10711 true Bd2: 7449218-7459928 Brachypodium distachyon
Bradi2g09170 5.0kb downstream 5.0kb downstream 5000 false Bd2: 7454929-7459928 Brachypodium distachyon
Bradi2g09170 10.0kb upstream 10.0kb upstream 15711 true Bd2: 7439218-7454928 Brachypodium distachyon
Bradi2g09170 10.0kb upstream 10.0kb upstream 10000 false Bd2: 7439218-7449217 Brachypodium distachyon
Bradi2g09170 10.0kb downstream 10.0kb downstream 15711 true Bd2: 7449218-7464928 Brachypodium distachyon
Bradi2g09170 10.0kb downstream 10.0kb downstream 10000 false Bd2: 7454929-7464928 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124573472 5269 Grass View MSA
122050667 5273 Angiosperm View MSA
121343955 5274 Embryophyte View MSA
123424287 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.392        
cufflinks 10.527     High  
cufflinks 12.602     High High
cufflinks 9.893        
cufflinks 7.858        
cufflinks 9.123        
cufflinks 8.698        
cufflinks 7.38        
cufflinks 8.559        
cufflinks 9.111        
cufflinks 7.021        
cufflinks 7.55        
cufflinks 4.71       Low
cufflinks 5.261       Low
cufflinks 6.758        
cufflinks 8.884        
cufflinks 9.477        
cufflinks 14.226     High High
cufflinks 11.953        
cufflinks 9.292        
cufflinks 8.707        
cufflinks 12.01     High  
cufflinks 7.449        
cufflinks 7.772        
cufflinks 9.027        
cufflinks 12.05     High  
cufflinks 6.308       Low
cufflinks 12.491     High High
cufflinks 11.95     High  
cufflinks 9.596        

0 Strain