Gene : Bradi5g03100 B. distachyon v3.1
Defline:  (1 of 2) PTHR12838 - U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 11 Genomic Order:  355
Name:  ? Bradi5g03100 Secondary Identifier:  ? PAC:32809628
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi5g03100 0.5kb upstream 0.5kb upstream 2758 true Bd5: 3433714-3436471 Brachypodium distachyon
Bradi5g03100 0.5kb upstream 0.5kb upstream 500 false Bd5: 3435972-3436471 Brachypodium distachyon
Bradi5g03100 0.5kb downstream 0.5kb downstream 2758 true Bd5: 3433214-3435971 Brachypodium distachyon
Bradi5g03100 0.5kb downstream 0.5kb downstream 500 false Bd5: 3433214-3433713 Brachypodium distachyon
Bradi5g03100 1.0kb upstream 1.0kb upstream 3258 true Bd5: 3433714-3436971 Brachypodium distachyon
Bradi5g03100 1.0kb upstream 1.0kb upstream 1000 false Bd5: 3435972-3436971 Brachypodium distachyon
Bradi5g03100 1.0kb downstream 1.0kb downstream 3258 true Bd5: 3432714-3435971 Brachypodium distachyon
Bradi5g03100 1.0kb downstream 1.0kb downstream 1000 false Bd5: 3432714-3433713 Brachypodium distachyon
Bradi5g03100 2.0kb upstream 2.0kb upstream 4258 true Bd5: 3433714-3437971 Brachypodium distachyon
Bradi5g03100 2.0kb upstream 2.0kb upstream 2000 false Bd5: 3435972-3437971 Brachypodium distachyon
Bradi5g03100 2.0kb downstream 2.0kb downstream 4258 true Bd5: 3431714-3435971 Brachypodium distachyon
Bradi5g03100 2.0kb downstream 2.0kb downstream 2000 false Bd5: 3431714-3433713 Brachypodium distachyon
Bradi5g03100 5.0kb upstream 5.0kb upstream 7258 true Bd5: 3433714-3440971 Brachypodium distachyon
Bradi5g03100 5.0kb upstream 5.0kb upstream 5000 false Bd5: 3435972-3440971 Brachypodium distachyon
Bradi5g03100 5.0kb downstream 5.0kb downstream 7258 true Bd5: 3428714-3435971 Brachypodium distachyon
Bradi5g03100 5.0kb downstream 5.0kb downstream 5000 false Bd5: 3428714-3433713 Brachypodium distachyon
Bradi5g03100 10.0kb upstream 10.0kb upstream 12258 true Bd5: 3433714-3445971 Brachypodium distachyon
Bradi5g03100 10.0kb upstream 10.0kb upstream 10000 false Bd5: 3435972-3445971 Brachypodium distachyon
Bradi5g03100 10.0kb downstream 10.0kb downstream 12258 true Bd5: 3423714-3435971 Brachypodium distachyon
Bradi5g03100 10.0kb downstream 10.0kb downstream 10000 false Bd5: 3423714-3433713 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124475328 5269 Grass Singleton cluster - no MSA
122051438 5273 Angiosperm View MSA
121350042 5274 Embryophyte View MSA
123425029 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.857        
cufflinks 2.349        
cufflinks 2.435        
cufflinks 2.973        
cufflinks 1.591       Low
cufflinks 1.84        
cufflinks 2.244        
cufflinks 1.398       Low
cufflinks 1.777       Low
cufflinks 2.365        
cufflinks 2.509        
cufflinks 1.483       Low
cufflinks 2.018        
cufflinks 2.018        
cufflinks 2.445        
cufflinks 1.773       Low
cufflinks 2.056        
cufflinks 2.122        
cufflinks 3.94       High
cufflinks 4.115       High
cufflinks 2.449        
cufflinks 1.663       Low
cufflinks 1.638       Low
cufflinks 1.8        
cufflinks 2.446        
cufflinks 3.302        
cufflinks 2.663        
cufflinks 2.71        
cufflinks 2.203        
cufflinks 2.676        

0 Strain