Gene : Bradi2g04960 B. distachyon v3.1
Defline:  (1 of 3) 6.1.1.9 - Valine--tRNA ligase / Valyl-tRNA synthetase Genomic Order:  643
Name:  ? Bradi2g04960 Secondary Identifier:  ? PAC:32777795
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon TRNA-CHARGING-PWY Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g04960 0.5kb upstream 0.5kb upstream 8300 true Bd2: 3548639-3556938 Brachypodium distachyon
Bradi2g04960 0.5kb upstream 0.5kb upstream 500 false Bd2: 3548639-3549138 Brachypodium distachyon
Bradi2g04960 0.5kb downstream 0.5kb downstream 8300 true Bd2: 3549139-3557438 Brachypodium distachyon
Bradi2g04960 0.5kb downstream 0.5kb downstream 500 false Bd2: 3556939-3557438 Brachypodium distachyon
Bradi2g04960 1.0kb upstream 1.0kb upstream 8800 true Bd2: 3548139-3556938 Brachypodium distachyon
Bradi2g04960 1.0kb upstream 1.0kb upstream 1000 false Bd2: 3548139-3549138 Brachypodium distachyon
Bradi2g04960 1.0kb downstream 1.0kb downstream 8800 true Bd2: 3549139-3557938 Brachypodium distachyon
Bradi2g04960 1.0kb downstream 1.0kb downstream 1000 false Bd2: 3556939-3557938 Brachypodium distachyon
Bradi2g04960 2.0kb upstream 2.0kb upstream 9800 true Bd2: 3547139-3556938 Brachypodium distachyon
Bradi2g04960 2.0kb upstream 2.0kb upstream 2000 false Bd2: 3547139-3549138 Brachypodium distachyon
Bradi2g04960 2.0kb downstream 2.0kb downstream 9800 true Bd2: 3549139-3558938 Brachypodium distachyon
Bradi2g04960 2.0kb downstream 2.0kb downstream 2000 false Bd2: 3556939-3558938 Brachypodium distachyon
Bradi2g04960 5.0kb upstream 5.0kb upstream 12800 true Bd2: 3544139-3556938 Brachypodium distachyon
Bradi2g04960 5.0kb upstream 5.0kb upstream 5000 false Bd2: 3544139-3549138 Brachypodium distachyon
Bradi2g04960 5.0kb downstream 5.0kb downstream 12800 true Bd2: 3549139-3561938 Brachypodium distachyon
Bradi2g04960 5.0kb downstream 5.0kb downstream 5000 false Bd2: 3556939-3561938 Brachypodium distachyon
Bradi2g04960 10.0kb upstream 10.0kb upstream 17800 true Bd2: 3539139-3556938 Brachypodium distachyon
Bradi2g04960 10.0kb upstream 10.0kb upstream 10000 false Bd2: 3539139-3549138 Brachypodium distachyon
Bradi2g04960 10.0kb downstream 10.0kb downstream 17800 true Bd2: 3549139-3566938 Brachypodium distachyon
Bradi2g04960 10.0kb downstream 10.0kb downstream 10000 false Bd2: 3556939-3566938 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124590006 5269 Grass View MSA
122045228 5273 Angiosperm View MSA
121348805 5274 Embryophyte View MSA
123424302 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.066     High  
cufflinks 28.41     High High
cufflinks 25.631     High  
cufflinks 24.068     High  
cufflinks 7.895       Low
cufflinks 24.612     High  
cufflinks 22.163     High  
cufflinks 16.688     High  
cufflinks 21.715     High  
cufflinks 10.438     High  
cufflinks 13.51     High  
cufflinks 21.645     High  
cufflinks 8.666     High Low
cufflinks 8.73     High Low
cufflinks 9.243     High Low
cufflinks 24.977     High  
cufflinks 11.462     High  
cufflinks 35.766     High High
cufflinks 12.523        
cufflinks 5.66       Low
cufflinks 13.136     High  
cufflinks 19.89     High  
cufflinks 16.488     High  
cufflinks 18.723     High  
cufflinks 20.729     High  
cufflinks 18.402     High  
cufflinks 10.344     High  
cufflinks 16.188     High  
cufflinks 17.321     High  
cufflinks 25.528     High  

0 Strain