Gene : Bradi2g05520 B. distachyon v3.1
Defline:  (1 of 7) PF13426 - PAS domain (PAS_9) Genomic Order:  713
Name:  ? Bradi2g05520 Secondary Identifier:  ? PAC:32782188
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g05520 0.5kb upstream 0.5kb upstream 5456 true Bd2: 3992661-3998116 Brachypodium distachyon
Bradi2g05520 0.5kb upstream 0.5kb upstream 500 false Bd2: 3997617-3998116 Brachypodium distachyon
Bradi2g05520 0.5kb downstream 0.5kb downstream 5456 true Bd2: 3992161-3997616 Brachypodium distachyon
Bradi2g05520 0.5kb downstream 0.5kb downstream 500 false Bd2: 3992161-3992660 Brachypodium distachyon
Bradi2g05520 1.0kb upstream 1.0kb upstream 5956 true Bd2: 3992661-3998616 Brachypodium distachyon
Bradi2g05520 1.0kb upstream 1.0kb upstream 1000 false Bd2: 3997617-3998616 Brachypodium distachyon
Bradi2g05520 1.0kb downstream 1.0kb downstream 5956 true Bd2: 3991661-3997616 Brachypodium distachyon
Bradi2g05520 1.0kb downstream 1.0kb downstream 1000 false Bd2: 3991661-3992660 Brachypodium distachyon
Bradi2g05520 2.0kb upstream 2.0kb upstream 6956 true Bd2: 3992661-3999616 Brachypodium distachyon
Bradi2g05520 2.0kb upstream 2.0kb upstream 2000 false Bd2: 3997617-3999616 Brachypodium distachyon
Bradi2g05520 2.0kb downstream 2.0kb downstream 6956 true Bd2: 3990661-3997616 Brachypodium distachyon
Bradi2g05520 2.0kb downstream 2.0kb downstream 2000 false Bd2: 3990661-3992660 Brachypodium distachyon
Bradi2g05520 5.0kb upstream 5.0kb upstream 9956 true Bd2: 3992661-4002616 Brachypodium distachyon
Bradi2g05520 5.0kb upstream 5.0kb upstream 5000 false Bd2: 3997617-4002616 Brachypodium distachyon
Bradi2g05520 5.0kb downstream 5.0kb downstream 9956 true Bd2: 3987661-3997616 Brachypodium distachyon
Bradi2g05520 5.0kb downstream 5.0kb downstream 5000 false Bd2: 3987661-3992660 Brachypodium distachyon
Bradi2g05520 10.0kb upstream 10.0kb upstream 14956 true Bd2: 3992661-4007616 Brachypodium distachyon
Bradi2g05520 10.0kb upstream 10.0kb upstream 10000 false Bd2: 3997617-4007616 Brachypodium distachyon
Bradi2g05520 10.0kb downstream 10.0kb downstream 14956 true Bd2: 3982661-3997616 Brachypodium distachyon
Bradi2g05520 10.0kb downstream 10.0kb downstream 10000 false Bd2: 3982661-3992660 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124576216 5269 Grass View MSA
122045856 5273 Angiosperm View MSA
121348460 5274 Embryophyte View MSA
123424929 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.014       High
cufflinks 3.116        
cufflinks 3.338        
cufflinks 1.877        
cufflinks 1.355       Low
cufflinks 3.262        
cufflinks 4.268        
cufflinks 1.184       Low
cufflinks 2.641        
cufflinks 4.338        
cufflinks 3.796        
cufflinks 1.815        
cufflinks 3.334        
cufflinks 2.687        
cufflinks 1.251       Low
cufflinks 2.958        
cufflinks 3.119        
cufflinks 2.946        
cufflinks 13.312     High High
cufflinks 1.915        
cufflinks 3.136        
cufflinks 2.167        
cufflinks 1.12       Low
cufflinks 2.039        
cufflinks 3.356        
cufflinks 6.422       High
cufflinks 5.196       High
cufflinks 7.0       High
cufflinks 4.206        
cufflinks 2.097        

0 Strain