Gene : Bradi2g05710 B. distachyon v3.1
Defline:  (1 of 1) PTHR11851//PTHR11851:SF138 - METALLOPROTEASE // SUBFAMILY NOT NAMED Genomic Order:  735
Name:  ? Bradi2g05710 Secondary Identifier:  ? PAC:32782277
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-3781 Brachypodium distachyon pathologic  
Bdistachyon PWY-7279 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g05710 0.5kb upstream 0.5kb upstream 6410 true Bd2: 4192247-4198656 Brachypodium distachyon
Bradi2g05710 0.5kb upstream 0.5kb upstream 500 false Bd2: 4192247-4192746 Brachypodium distachyon
Bradi2g05710 0.5kb downstream 0.5kb downstream 6410 true Bd2: 4192747-4199156 Brachypodium distachyon
Bradi2g05710 0.5kb downstream 0.5kb downstream 500 false Bd2: 4198657-4199156 Brachypodium distachyon
Bradi2g05710 1.0kb upstream 1.0kb upstream 6910 true Bd2: 4191747-4198656 Brachypodium distachyon
Bradi2g05710 1.0kb upstream 1.0kb upstream 1000 false Bd2: 4191747-4192746 Brachypodium distachyon
Bradi2g05710 1.0kb downstream 1.0kb downstream 6910 true Bd2: 4192747-4199656 Brachypodium distachyon
Bradi2g05710 1.0kb downstream 1.0kb downstream 1000 false Bd2: 4198657-4199656 Brachypodium distachyon
Bradi2g05710 2.0kb upstream 2.0kb upstream 7910 true Bd2: 4190747-4198656 Brachypodium distachyon
Bradi2g05710 2.0kb upstream 2.0kb upstream 2000 false Bd2: 4190747-4192746 Brachypodium distachyon
Bradi2g05710 2.0kb downstream 2.0kb downstream 7910 true Bd2: 4192747-4200656 Brachypodium distachyon
Bradi2g05710 2.0kb downstream 2.0kb downstream 2000 false Bd2: 4198657-4200656 Brachypodium distachyon
Bradi2g05710 5.0kb upstream 5.0kb upstream 10910 true Bd2: 4187747-4198656 Brachypodium distachyon
Bradi2g05710 5.0kb upstream 5.0kb upstream 5000 false Bd2: 4187747-4192746 Brachypodium distachyon
Bradi2g05710 5.0kb downstream 5.0kb downstream 10910 true Bd2: 4192747-4203656 Brachypodium distachyon
Bradi2g05710 5.0kb downstream 5.0kb downstream 5000 false Bd2: 4198657-4203656 Brachypodium distachyon
Bradi2g05710 10.0kb upstream 10.0kb upstream 15910 true Bd2: 4182747-4198656 Brachypodium distachyon
Bradi2g05710 10.0kb upstream 10.0kb upstream 10000 false Bd2: 4182747-4192746 Brachypodium distachyon
Bradi2g05710 10.0kb downstream 10.0kb downstream 15910 true Bd2: 4192747-4208656 Brachypodium distachyon
Bradi2g05710 10.0kb downstream 10.0kb downstream 10000 false Bd2: 4198657-4208656 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041394 5273 Angiosperm View MSA
124574686 5269 Grass View MSA
121350423 5274 Embryophyte View MSA
123425006 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 28.351     High  
cufflinks 28.529     High  
cufflinks 25.408     High  
cufflinks 25.76     High  
cufflinks 17.215     High  
cufflinks 26.601     High  
cufflinks 25.274     High  
cufflinks 24.146     High  
cufflinks 25.062     High  
cufflinks 20.42     High  
cufflinks 13.683     High Low
cufflinks 26.418     High  
cufflinks 12.813     High Low
cufflinks 13.265     High Low
cufflinks 19.844     High  
cufflinks 29.708     High  
cufflinks 22.967     High  
cufflinks 54.258     High High
cufflinks 21.319     High  
cufflinks 14.913     High Low
cufflinks 27.608     High  
cufflinks 24.308     High  
cufflinks 22.732     High  
cufflinks 26.262     High  
cufflinks 25.216     High  
cufflinks 23.676     High  
cufflinks 15.726     High  
cufflinks 19.804     High  
cufflinks 20.385     High  
cufflinks 33.061     High High

0 Strain