Gene : Bradi5g03590 B. distachyon v3.1
Defline:  (1 of 2) PTHR35514:SF1 - THYLAKOID LUMENAL 15.0 KDA PROTEIN 2, CHLOROPLASTIC Genomic Order:  427
Name:  ? Bradi5g03590 Secondary Identifier:  ? PAC:32808998
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi5g03590 0.5kb upstream 0.5kb upstream 5856 true Bd5: 4360856-4366711 Brachypodium distachyon
Bradi5g03590 0.5kb upstream 0.5kb upstream 500 false Bd5: 4366212-4366711 Brachypodium distachyon
Bradi5g03590 0.5kb downstream 0.5kb downstream 5856 true Bd5: 4360356-4366211 Brachypodium distachyon
Bradi5g03590 0.5kb downstream 0.5kb downstream 500 false Bd5: 4360356-4360855 Brachypodium distachyon
Bradi5g03590 1.0kb upstream 1.0kb upstream 6356 true Bd5: 4360856-4367211 Brachypodium distachyon
Bradi5g03590 1.0kb upstream 1.0kb upstream 1000 false Bd5: 4366212-4367211 Brachypodium distachyon
Bradi5g03590 1.0kb downstream 1.0kb downstream 6356 true Bd5: 4359856-4366211 Brachypodium distachyon
Bradi5g03590 1.0kb downstream 1.0kb downstream 1000 false Bd5: 4359856-4360855 Brachypodium distachyon
Bradi5g03590 2.0kb upstream 2.0kb upstream 7356 true Bd5: 4360856-4368211 Brachypodium distachyon
Bradi5g03590 2.0kb upstream 2.0kb upstream 2000 false Bd5: 4366212-4368211 Brachypodium distachyon
Bradi5g03590 2.0kb downstream 2.0kb downstream 7356 true Bd5: 4358856-4366211 Brachypodium distachyon
Bradi5g03590 2.0kb downstream 2.0kb downstream 2000 false Bd5: 4358856-4360855 Brachypodium distachyon
Bradi5g03590 5.0kb upstream 5.0kb upstream 10356 true Bd5: 4360856-4371211 Brachypodium distachyon
Bradi5g03590 5.0kb upstream 5.0kb upstream 5000 false Bd5: 4366212-4371211 Brachypodium distachyon
Bradi5g03590 5.0kb downstream 5.0kb downstream 10356 true Bd5: 4355856-4366211 Brachypodium distachyon
Bradi5g03590 5.0kb downstream 5.0kb downstream 5000 false Bd5: 4355856-4360855 Brachypodium distachyon
Bradi5g03590 10.0kb upstream 10.0kb upstream 15356 true Bd5: 4360856-4376211 Brachypodium distachyon
Bradi5g03590 10.0kb upstream 10.0kb upstream 10000 false Bd5: 4366212-4376211 Brachypodium distachyon
Bradi5g03590 10.0kb downstream 10.0kb downstream 15356 true Bd5: 4350856-4366211 Brachypodium distachyon
Bradi5g03590 10.0kb downstream 10.0kb downstream 10000 false Bd5: 4350856-4360855 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124581506 5269 Grass View MSA
122051168 5273 Angiosperm View MSA
121346154 5274 Embryophyte View MSA
123424497 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.89        
cufflinks 5.566        
cufflinks 6.395        
cufflinks 9.091        
cufflinks 7.178        
cufflinks 4.567        
cufflinks 5.287        
cufflinks 4.415        
cufflinks 4.256        
cufflinks 9.647        
cufflinks 4.816        
cufflinks 4.022        
cufflinks 5.305        
cufflinks 5.315        
cufflinks 6.486        
cufflinks 5.433        
cufflinks 7.531        
cufflinks 0.898       Low
cufflinks 6.627        
cufflinks 9.685        
cufflinks 4.705        
cufflinks 5.55        
cufflinks 5.109        
cufflinks 5.369        
cufflinks 6.619        
cufflinks 9.447        
cufflinks 3.595        
cufflinks 8.732        
cufflinks 7.075        
cufflinks 4.216        

0 Strain