Gene : Bradi2g10100 B. distachyon v3.1
Defline:  (1 of 1) PTHR10277//PTHR10277:SF41 - HOMOCITRATE SYNTHASE-RELATED // SUBFAMILY NOT NAMED Genomic Order:  1296
Name:  ? Bradi2g10100 Secondary Identifier:  ? PAC:32779508
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon LEU-DEG2-PWY Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g10100 0.5kb upstream 0.5kb upstream 6467 true Bd2: 8284440-8290906 Brachypodium distachyon
Bradi2g10100 0.5kb upstream 0.5kb upstream 500 false Bd2: 8290407-8290906 Brachypodium distachyon
Bradi2g10100 0.5kb downstream 0.5kb downstream 6467 true Bd2: 8283940-8290406 Brachypodium distachyon
Bradi2g10100 0.5kb downstream 0.5kb downstream 500 false Bd2: 8283940-8284439 Brachypodium distachyon
Bradi2g10100 1.0kb upstream 1.0kb upstream 6967 true Bd2: 8284440-8291406 Brachypodium distachyon
Bradi2g10100 1.0kb upstream 1.0kb upstream 1000 false Bd2: 8290407-8291406 Brachypodium distachyon
Bradi2g10100 1.0kb downstream 1.0kb downstream 6967 true Bd2: 8283440-8290406 Brachypodium distachyon
Bradi2g10100 1.0kb downstream 1.0kb downstream 1000 false Bd2: 8283440-8284439 Brachypodium distachyon
Bradi2g10100 2.0kb upstream 2.0kb upstream 7967 true Bd2: 8284440-8292406 Brachypodium distachyon
Bradi2g10100 2.0kb upstream 2.0kb upstream 2000 false Bd2: 8290407-8292406 Brachypodium distachyon
Bradi2g10100 2.0kb downstream 2.0kb downstream 7967 true Bd2: 8282440-8290406 Brachypodium distachyon
Bradi2g10100 2.0kb downstream 2.0kb downstream 2000 false Bd2: 8282440-8284439 Brachypodium distachyon
Bradi2g10100 5.0kb upstream 5.0kb upstream 10967 true Bd2: 8284440-8295406 Brachypodium distachyon
Bradi2g10100 5.0kb upstream 5.0kb upstream 5000 false Bd2: 8290407-8295406 Brachypodium distachyon
Bradi2g10100 5.0kb downstream 5.0kb downstream 10967 true Bd2: 8279440-8290406 Brachypodium distachyon
Bradi2g10100 5.0kb downstream 5.0kb downstream 5000 false Bd2: 8279440-8284439 Brachypodium distachyon
Bradi2g10100 10.0kb upstream 10.0kb upstream 15967 true Bd2: 8284440-8300406 Brachypodium distachyon
Bradi2g10100 10.0kb upstream 10.0kb upstream 10000 false Bd2: 8290407-8300406 Brachypodium distachyon
Bradi2g10100 10.0kb downstream 10.0kb downstream 15967 true Bd2: 8274440-8290406 Brachypodium distachyon
Bradi2g10100 10.0kb downstream 10.0kb downstream 10000 false Bd2: 8274440-8284439 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124575299 5269 Grass View MSA
122045409 5273 Angiosperm View MSA
121347999 5274 Embryophyte View MSA
123426187 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.534       Low
cufflinks 1.129        
cufflinks 1.352        
cufflinks 0.825        
cufflinks 0.889        
cufflinks 0.898        
cufflinks 1.069        
cufflinks 0.744        
cufflinks 0.769        
cufflinks 0.802        
cufflinks 1.102        
cufflinks 0.824        
cufflinks 0.855        
cufflinks 0.789        
cufflinks 0.624       Low
cufflinks 1.048        
cufflinks 0.634       Low
cufflinks 1.776       High
cufflinks 1.812       High
cufflinks 2.522       High
cufflinks 1.045        
cufflinks 1.084        
cufflinks 0.778        
cufflinks 0.602       Low
cufflinks 0.739        
cufflinks 1.245        
cufflinks 1.076        
cufflinks 1.406        
cufflinks 1.392        
cufflinks 1.07        

0 Strain