Gene : Bradi2g10080 B. distachyon v3.1
Defline:  (1 of 2) PTHR12917//PTHR12917:SF20 - ASPARTYL PROTEASE DDI-RELATED Genomic Order:  1294
Name:  ? Bradi2g10080 Secondary Identifier:  ? PAC:32778111
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g10080 0.5kb upstream 0.5kb upstream 6456 true Bd2: 8273353-8279808 Brachypodium distachyon
Bradi2g10080 0.5kb upstream 0.5kb upstream 500 false Bd2: 8273353-8273852 Brachypodium distachyon
Bradi2g10080 0.5kb downstream 0.5kb downstream 6456 true Bd2: 8273853-8280308 Brachypodium distachyon
Bradi2g10080 0.5kb downstream 0.5kb downstream 500 false Bd2: 8279809-8280308 Brachypodium distachyon
Bradi2g10080 1.0kb upstream 1.0kb upstream 6956 true Bd2: 8272853-8279808 Brachypodium distachyon
Bradi2g10080 1.0kb upstream 1.0kb upstream 1000 false Bd2: 8272853-8273852 Brachypodium distachyon
Bradi2g10080 1.0kb downstream 1.0kb downstream 6956 true Bd2: 8273853-8280808 Brachypodium distachyon
Bradi2g10080 1.0kb downstream 1.0kb downstream 1000 false Bd2: 8279809-8280808 Brachypodium distachyon
Bradi2g10080 2.0kb upstream 2.0kb upstream 7956 true Bd2: 8271853-8279808 Brachypodium distachyon
Bradi2g10080 2.0kb upstream 2.0kb upstream 2000 false Bd2: 8271853-8273852 Brachypodium distachyon
Bradi2g10080 2.0kb downstream 2.0kb downstream 7956 true Bd2: 8273853-8281808 Brachypodium distachyon
Bradi2g10080 2.0kb downstream 2.0kb downstream 2000 false Bd2: 8279809-8281808 Brachypodium distachyon
Bradi2g10080 5.0kb upstream 5.0kb upstream 10956 true Bd2: 8268853-8279808 Brachypodium distachyon
Bradi2g10080 5.0kb upstream 5.0kb upstream 5000 false Bd2: 8268853-8273852 Brachypodium distachyon
Bradi2g10080 5.0kb downstream 5.0kb downstream 10956 true Bd2: 8273853-8284808 Brachypodium distachyon
Bradi2g10080 5.0kb downstream 5.0kb downstream 5000 false Bd2: 8279809-8284808 Brachypodium distachyon
Bradi2g10080 10.0kb upstream 10.0kb upstream 15956 true Bd2: 8263853-8279808 Brachypodium distachyon
Bradi2g10080 10.0kb upstream 10.0kb upstream 10000 false Bd2: 8263853-8273852 Brachypodium distachyon
Bradi2g10080 10.0kb downstream 10.0kb downstream 15956 true Bd2: 8273853-8289808 Brachypodium distachyon
Bradi2g10080 10.0kb downstream 10.0kb downstream 10000 false Bd2: 8279809-8289808 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124576560 5269 Grass View MSA
122046571 5273 Angiosperm View MSA
121349564 5274 Embryophyte View MSA
123424365 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.723        
cufflinks 3.046        
cufflinks 3.398        
cufflinks 2.81        
cufflinks 3.62        
cufflinks 2.647        
cufflinks 2.836        
cufflinks 2.913        
cufflinks 2.885        
cufflinks 3.289        
cufflinks 2.849        
cufflinks 2.543        
cufflinks 2.246       Low
cufflinks 2.084       Low
cufflinks 2.798        
cufflinks 2.77        
cufflinks 2.805        
cufflinks 5.533       High
cufflinks 5.834       High
cufflinks 5.661       High
cufflinks 3.944        
cufflinks 3.249        
cufflinks 2.892        
cufflinks 2.834        
cufflinks 2.815        
cufflinks 3.336        
cufflinks 3.014        
cufflinks 3.594        
cufflinks 3.059        
cufflinks 3.456        

0 Strain