Gene : Bradi2g16600 B. distachyon v3.1
Defline:  (1 of 1) KOG2979 - Protein involved in DNA repair Genomic Order:  2106
Name:  ? Bradi2g16600 Secondary Identifier:  ? PAC:32779965
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g16600 0.5kb upstream 0.5kb upstream 3073 true Bd2: 14574522-14577594 Brachypodium distachyon
Bradi2g16600 0.5kb upstream 0.5kb upstream 500 false Bd2: 14574522-14575021 Brachypodium distachyon
Bradi2g16600 0.5kb downstream 0.5kb downstream 3073 true Bd2: 14575022-14578094 Brachypodium distachyon
Bradi2g16600 0.5kb downstream 0.5kb downstream 500 false Bd2: 14577595-14578094 Brachypodium distachyon
Bradi2g16600 1.0kb upstream 1.0kb upstream 3573 true Bd2: 14574022-14577594 Brachypodium distachyon
Bradi2g16600 1.0kb upstream 1.0kb upstream 1000 false Bd2: 14574022-14575021 Brachypodium distachyon
Bradi2g16600 1.0kb downstream 1.0kb downstream 3573 true Bd2: 14575022-14578594 Brachypodium distachyon
Bradi2g16600 1.0kb downstream 1.0kb downstream 1000 false Bd2: 14577595-14578594 Brachypodium distachyon
Bradi2g16600 2.0kb upstream 2.0kb upstream 4573 true Bd2: 14573022-14577594 Brachypodium distachyon
Bradi2g16600 2.0kb upstream 2.0kb upstream 2000 false Bd2: 14573022-14575021 Brachypodium distachyon
Bradi2g16600 2.0kb downstream 2.0kb downstream 4573 true Bd2: 14575022-14579594 Brachypodium distachyon
Bradi2g16600 2.0kb downstream 2.0kb downstream 2000 false Bd2: 14577595-14579594 Brachypodium distachyon
Bradi2g16600 5.0kb upstream 5.0kb upstream 7573 true Bd2: 14570022-14577594 Brachypodium distachyon
Bradi2g16600 5.0kb upstream 5.0kb upstream 5000 false Bd2: 14570022-14575021 Brachypodium distachyon
Bradi2g16600 5.0kb downstream 5.0kb downstream 7573 true Bd2: 14575022-14582594 Brachypodium distachyon
Bradi2g16600 5.0kb downstream 5.0kb downstream 5000 false Bd2: 14577595-14582594 Brachypodium distachyon
Bradi2g16600 10.0kb upstream 10.0kb upstream 12573 true Bd2: 14565022-14577594 Brachypodium distachyon
Bradi2g16600 10.0kb upstream 10.0kb upstream 10000 false Bd2: 14565022-14575021 Brachypodium distachyon
Bradi2g16600 10.0kb downstream 10.0kb downstream 12573 true Bd2: 14575022-14587594 Brachypodium distachyon
Bradi2g16600 10.0kb downstream 10.0kb downstream 10000 false Bd2: 14577595-14587594 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124581764 5269 Grass View MSA
122044966 5273 Angiosperm View MSA
121344157 5274 Embryophyte View MSA
123424394 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.716        
cufflinks 0.588        
cufflinks 0.598        
cufflinks 0.771        
cufflinks 0.636        
cufflinks 0.57        
cufflinks 0.601        
cufflinks 0.744        
cufflinks 0.63        
cufflinks 0.812        
cufflinks 0.634        
cufflinks 0.463       Low
cufflinks 0.433       Low
cufflinks 0.549       Low
cufflinks 0.728        
cufflinks 0.516       Low
cufflinks 1.078       High
cufflinks 1.171       High
cufflinks 0.494       Low
cufflinks 0.649        
cufflinks 1.223       High
cufflinks 0.581        
cufflinks 0.656        
cufflinks 0.59        
cufflinks 0.721        
cufflinks 0.874        
cufflinks 0.641        
cufflinks 0.826        
cufflinks 0.827        
cufflinks 0.926        

0 Strain