Gene : Bradi2g16580 B. distachyon v3.1
Defline:  (1 of 2) PTHR21330:SF2 - E3 SUMO-PROTEIN LIGASE MMS21 Genomic Order:  2104
Name:  ? Bradi2g16580 Secondary Identifier:  ? PAC:32776040
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g16580 0.5kb upstream 0.5kb upstream 2882 true Bd2: 14567404-14570285 Brachypodium distachyon
Bradi2g16580 0.5kb upstream 0.5kb upstream 500 false Bd2: 14567404-14567903 Brachypodium distachyon
Bradi2g16580 0.5kb downstream 0.5kb downstream 2882 true Bd2: 14567904-14570785 Brachypodium distachyon
Bradi2g16580 0.5kb downstream 0.5kb downstream 500 false Bd2: 14570286-14570785 Brachypodium distachyon
Bradi2g16580 1.0kb upstream 1.0kb upstream 3382 true Bd2: 14566904-14570285 Brachypodium distachyon
Bradi2g16580 1.0kb upstream 1.0kb upstream 1000 false Bd2: 14566904-14567903 Brachypodium distachyon
Bradi2g16580 1.0kb downstream 1.0kb downstream 3382 true Bd2: 14567904-14571285 Brachypodium distachyon
Bradi2g16580 1.0kb downstream 1.0kb downstream 1000 false Bd2: 14570286-14571285 Brachypodium distachyon
Bradi2g16580 2.0kb upstream 2.0kb upstream 4382 true Bd2: 14565904-14570285 Brachypodium distachyon
Bradi2g16580 2.0kb upstream 2.0kb upstream 2000 false Bd2: 14565904-14567903 Brachypodium distachyon
Bradi2g16580 2.0kb downstream 2.0kb downstream 4382 true Bd2: 14567904-14572285 Brachypodium distachyon
Bradi2g16580 2.0kb downstream 2.0kb downstream 2000 false Bd2: 14570286-14572285 Brachypodium distachyon
Bradi2g16580 5.0kb upstream 5.0kb upstream 7382 true Bd2: 14562904-14570285 Brachypodium distachyon
Bradi2g16580 5.0kb upstream 5.0kb upstream 5000 false Bd2: 14562904-14567903 Brachypodium distachyon
Bradi2g16580 5.0kb downstream 5.0kb downstream 7382 true Bd2: 14567904-14575285 Brachypodium distachyon
Bradi2g16580 5.0kb downstream 5.0kb downstream 5000 false Bd2: 14570286-14575285 Brachypodium distachyon
Bradi2g16580 10.0kb upstream 10.0kb upstream 12382 true Bd2: 14557904-14570285 Brachypodium distachyon
Bradi2g16580 10.0kb upstream 10.0kb upstream 10000 false Bd2: 14557904-14567903 Brachypodium distachyon
Bradi2g16580 10.0kb downstream 10.0kb downstream 12382 true Bd2: 14567904-14580285 Brachypodium distachyon
Bradi2g16580 10.0kb downstream 10.0kb downstream 10000 false Bd2: 14570286-14580285 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124567888 5269 Grass View MSA
122044966 5273 Angiosperm View MSA
121344157 5274 Embryophyte View MSA
123424394 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.118        
cufflinks 0.246        
cufflinks 0.187        
cufflinks 0.123        
cufflinks 0.035     Low Low
cufflinks 0.138        
cufflinks 0.183        
cufflinks 0.179        
cufflinks 0.2        
cufflinks 0.174        
cufflinks 0.089        
cufflinks 0.131        
cufflinks 0.052     Low Low
cufflinks 0.071        
cufflinks 0.072     Low  
cufflinks 0.117        
cufflinks 0.067     Low  
cufflinks 0.27       High
cufflinks 0.125     Low  
cufflinks 0.019     Low Low
cufflinks 0.254        
cufflinks 0.215        
cufflinks 0.166        
cufflinks 0.173        
cufflinks 0.182        
cufflinks 0.167        
cufflinks 0.054     Low Low
cufflinks 0.176        
cufflinks 0.216        
cufflinks 0.228        

0 Strain