Gene : Bradi2g17400 B. distachyon v3.1
Defline:  (1 of 2) 2.5.1.112 - Adenylate dimethylallyltransferase (ADP/ATP-dependent) / Isopentenyltransferase Genomic Order:  2217
Name:  ? Bradi2g17400 Secondary Identifier:  ? PAC:32774720
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-2681 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g17400 0.5kb upstream 0.5kb upstream 1703 true Bd2: 15446592-15448294 Brachypodium distachyon
Bradi2g17400 0.5kb upstream 0.5kb upstream 500 false Bd2: 15447795-15448294 Brachypodium distachyon
Bradi2g17400 0.5kb downstream 0.5kb downstream 1703 true Bd2: 15446092-15447794 Brachypodium distachyon
Bradi2g17400 0.5kb downstream 0.5kb downstream 500 false Bd2: 15446092-15446591 Brachypodium distachyon
Bradi2g17400 1.0kb upstream 1.0kb upstream 2203 true Bd2: 15446592-15448794 Brachypodium distachyon
Bradi2g17400 1.0kb upstream 1.0kb upstream 1000 false Bd2: 15447795-15448794 Brachypodium distachyon
Bradi2g17400 1.0kb downstream 1.0kb downstream 2203 true Bd2: 15445592-15447794 Brachypodium distachyon
Bradi2g17400 1.0kb downstream 1.0kb downstream 1000 false Bd2: 15445592-15446591 Brachypodium distachyon
Bradi2g17400 2.0kb upstream 2.0kb upstream 3203 true Bd2: 15446592-15449794 Brachypodium distachyon
Bradi2g17400 2.0kb upstream 2.0kb upstream 2000 false Bd2: 15447795-15449794 Brachypodium distachyon
Bradi2g17400 2.0kb downstream 2.0kb downstream 3203 true Bd2: 15444592-15447794 Brachypodium distachyon
Bradi2g17400 2.0kb downstream 2.0kb downstream 2000 false Bd2: 15444592-15446591 Brachypodium distachyon
Bradi2g17400 5.0kb upstream 5.0kb upstream 6203 true Bd2: 15446592-15452794 Brachypodium distachyon
Bradi2g17400 5.0kb upstream 5.0kb upstream 5000 false Bd2: 15447795-15452794 Brachypodium distachyon
Bradi2g17400 5.0kb downstream 5.0kb downstream 6203 true Bd2: 15441592-15447794 Brachypodium distachyon
Bradi2g17400 5.0kb downstream 5.0kb downstream 5000 false Bd2: 15441592-15446591 Brachypodium distachyon
Bradi2g17400 10.0kb upstream 10.0kb upstream 11203 true Bd2: 15446592-15457794 Brachypodium distachyon
Bradi2g17400 10.0kb upstream 10.0kb upstream 10000 false Bd2: 15447795-15457794 Brachypodium distachyon
Bradi2g17400 10.0kb downstream 10.0kb downstream 11203 true Bd2: 15436592-15447794 Brachypodium distachyon
Bradi2g17400 10.0kb downstream 10.0kb downstream 10000 false Bd2: 15436592-15446591 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124577138 5269 Grass View MSA
122046326 5273 Angiosperm View MSA
121310589 5274 Embryophyte View MSA
123428607 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.06     Low Low
cufflinks 0.045     Low Low
cufflinks 0.126        
cufflinks 0.249        
cufflinks 0.024     Low Low
cufflinks 0.291        
cufflinks 0.136        
cufflinks 0.097        
cufflinks 0.377        
cufflinks 0.189        
cufflinks 0.096        
cufflinks 0.382        
cufflinks 0.3        
cufflinks 0.553       High
cufflinks 0.317        
cufflinks 0.351        
cufflinks 0.451       High
cufflinks 0.113     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.106        
cufflinks 0.131        
cufflinks 0.13        
cufflinks 0.439       High
cufflinks 0.27        
cufflinks 0.199        
cufflinks 0.02     Low Low
cufflinks 0.289        
cufflinks 0.702       High
cufflinks 0.064     Low Low

0 Strain