Gene : Bradi2g13690 B. distachyon v3.1
Defline:  (1 of 1) PF16669 - Tetratricopeptide repeat protein 5 OB fold domain (TTC5_OB) Genomic Order:  1782
Name:  ? Bradi2g13690 Secondary Identifier:  ? PAC:32780438
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g13690 0.5kb upstream 0.5kb upstream 12846 true Bd2: 12201831-12214676 Brachypodium distachyon
Bradi2g13690 0.5kb upstream 0.5kb upstream 500 false Bd2: 12201831-12202330 Brachypodium distachyon
Bradi2g13690 0.5kb downstream 0.5kb downstream 12846 true Bd2: 12202331-12215176 Brachypodium distachyon
Bradi2g13690 0.5kb downstream 0.5kb downstream 500 false Bd2: 12214677-12215176 Brachypodium distachyon
Bradi2g13690 1.0kb upstream 1.0kb upstream 13346 true Bd2: 12201331-12214676 Brachypodium distachyon
Bradi2g13690 1.0kb upstream 1.0kb upstream 1000 false Bd2: 12201331-12202330 Brachypodium distachyon
Bradi2g13690 1.0kb downstream 1.0kb downstream 13346 true Bd2: 12202331-12215676 Brachypodium distachyon
Bradi2g13690 1.0kb downstream 1.0kb downstream 1000 false Bd2: 12214677-12215676 Brachypodium distachyon
Bradi2g13690 2.0kb upstream 2.0kb upstream 14346 true Bd2: 12200331-12214676 Brachypodium distachyon
Bradi2g13690 2.0kb upstream 2.0kb upstream 2000 false Bd2: 12200331-12202330 Brachypodium distachyon
Bradi2g13690 2.0kb downstream 2.0kb downstream 14346 true Bd2: 12202331-12216676 Brachypodium distachyon
Bradi2g13690 2.0kb downstream 2.0kb downstream 2000 false Bd2: 12214677-12216676 Brachypodium distachyon
Bradi2g13690 5.0kb upstream 5.0kb upstream 17346 true Bd2: 12197331-12214676 Brachypodium distachyon
Bradi2g13690 5.0kb upstream 5.0kb upstream 5000 false Bd2: 12197331-12202330 Brachypodium distachyon
Bradi2g13690 5.0kb downstream 5.0kb downstream 17346 true Bd2: 12202331-12219676 Brachypodium distachyon
Bradi2g13690 5.0kb downstream 5.0kb downstream 5000 false Bd2: 12214677-12219676 Brachypodium distachyon
Bradi2g13690 10.0kb upstream 10.0kb upstream 22346 true Bd2: 12192331-12214676 Brachypodium distachyon
Bradi2g13690 10.0kb upstream 10.0kb upstream 10000 false Bd2: 12192331-12202330 Brachypodium distachyon
Bradi2g13690 10.0kb downstream 10.0kb downstream 22346 true Bd2: 12202331-12224676 Brachypodium distachyon
Bradi2g13690 10.0kb downstream 10.0kb downstream 10000 false Bd2: 12214677-12224676 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124583284 5269 Grass View MSA
122048209 5273 Angiosperm View MSA
121349212 5274 Embryophyte View MSA
123425821 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.625       Low
cufflinks 2.1        
cufflinks 2.845        
cufflinks 2.345        
cufflinks 1.993        
cufflinks 2.161        
cufflinks 2.083        
cufflinks 1.972        
cufflinks 2.111        
cufflinks 3.823       High
cufflinks 2.187        
cufflinks 1.744        
cufflinks 1.767        
cufflinks 1.766        
cufflinks 1.456       Low
cufflinks 1.873        
cufflinks 2.831        
cufflinks 3.375       High
cufflinks 4.186       High
cufflinks 2.054        
cufflinks 3.781       High
cufflinks 3.358       High
cufflinks 2.124        
cufflinks 1.885        
cufflinks 2.426        
cufflinks 3.509       High
cufflinks 2.325        
cufflinks 3.922       High
cufflinks 3.565       High
cufflinks 2.588        

0 Strain