Gene : Bradi5g01350 B. distachyon v3.1
Defline:  (1 of 3) PTHR13856//PTHR13856:SF93 - VHS DOMAIN CONTAINING PROTEIN FAMILY // SUBFAMILY NOT NAMED Genomic Order:  136
Name:  ? Bradi5g01350 Secondary Identifier:  ? PAC:32811634
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi5g01350 0.5kb upstream 0.5kb upstream 4456 true Bd5: 1275100-1279555 Brachypodium distachyon
Bradi5g01350 0.5kb upstream 0.5kb upstream 500 false Bd5: 1275100-1275599 Brachypodium distachyon
Bradi5g01350 0.5kb downstream 0.5kb downstream 4456 true Bd5: 1275600-1280055 Brachypodium distachyon
Bradi5g01350 0.5kb downstream 0.5kb downstream 500 false Bd5: 1279556-1280055 Brachypodium distachyon
Bradi5g01350 1.0kb upstream 1.0kb upstream 4956 true Bd5: 1274600-1279555 Brachypodium distachyon
Bradi5g01350 1.0kb upstream 1.0kb upstream 1000 false Bd5: 1274600-1275599 Brachypodium distachyon
Bradi5g01350 1.0kb downstream 1.0kb downstream 4956 true Bd5: 1275600-1280555 Brachypodium distachyon
Bradi5g01350 1.0kb downstream 1.0kb downstream 1000 false Bd5: 1279556-1280555 Brachypodium distachyon
Bradi5g01350 2.0kb upstream 2.0kb upstream 5956 true Bd5: 1273600-1279555 Brachypodium distachyon
Bradi5g01350 2.0kb upstream 2.0kb upstream 2000 false Bd5: 1273600-1275599 Brachypodium distachyon
Bradi5g01350 2.0kb downstream 2.0kb downstream 5956 true Bd5: 1275600-1281555 Brachypodium distachyon
Bradi5g01350 2.0kb downstream 2.0kb downstream 2000 false Bd5: 1279556-1281555 Brachypodium distachyon
Bradi5g01350 5.0kb upstream 5.0kb upstream 8956 true Bd5: 1270600-1279555 Brachypodium distachyon
Bradi5g01350 5.0kb upstream 5.0kb upstream 5000 false Bd5: 1270600-1275599 Brachypodium distachyon
Bradi5g01350 5.0kb downstream 5.0kb downstream 8956 true Bd5: 1275600-1284555 Brachypodium distachyon
Bradi5g01350 5.0kb downstream 5.0kb downstream 5000 false Bd5: 1279556-1284555 Brachypodium distachyon
Bradi5g01350 10.0kb upstream 10.0kb upstream 13956 true Bd5: 1265600-1279555 Brachypodium distachyon
Bradi5g01350 10.0kb upstream 10.0kb upstream 10000 false Bd5: 1265600-1275599 Brachypodium distachyon
Bradi5g01350 10.0kb downstream 10.0kb downstream 13956 true Bd5: 1275600-1289555 Brachypodium distachyon
Bradi5g01350 10.0kb downstream 10.0kb downstream 10000 false Bd5: 1279556-1289555 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124583688 5269 Grass View MSA
122046025 5273 Angiosperm View MSA
121345678 5274 Embryophyte View MSA
123380253 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.219        
cufflinks 4.685        
cufflinks 4.254        
cufflinks 4.523        
cufflinks 4.585        
cufflinks 4.518        
cufflinks 4.338        
cufflinks 4.435        
cufflinks 4.171        
cufflinks 3.514        
cufflinks 4.047        
cufflinks 4.475        
cufflinks 3.375        
cufflinks 3.39        
cufflinks 5.115        
cufflinks 4.36        
cufflinks 3.915        
cufflinks 7.636       High
cufflinks 3.809        
cufflinks 2.377       Low
cufflinks 6.122       High
cufflinks 3.863        
cufflinks 4.384        
cufflinks 4.463        
cufflinks 4.415        
cufflinks 3.863        
cufflinks 5.159        
cufflinks 3.772        
cufflinks 3.651        
cufflinks 6.641       High

0 Strain