Gene : Bradi2g15740 B. distachyon v3.1
Defline:  (1 of 5) K00026 - malate dehydrogenase (MDH2) Genomic Order:  1995
Name:  ? Bradi2g15740 Secondary Identifier:  ? PAC:32779931
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Sequence Feature Displayer

Ontology Annotation Displayer

7 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon GLUCONEO-PWY Brachypodium distachyon pathologic  
Bdistachyon GLYOXYLATE-BYPASS Brachypodium distachyon pathologic  
Bdistachyon PWY-5464 Brachypodium distachyon pathologic  
Bdistachyon PWY-561 Brachypodium distachyon pathologic  
Bdistachyon PWY-5690 Brachypodium distachyon pathologic  
Bdistachyon PWY-5913 Brachypodium distachyon pathologic  
Bdistachyon PWY-7115 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g15740 0.5kb upstream 0.5kb upstream 4984 true Bd2: 13921758-13926741 Brachypodium distachyon
Bradi2g15740 0.5kb upstream 0.5kb upstream 500 false Bd2: 13921758-13922257 Brachypodium distachyon
Bradi2g15740 0.5kb downstream 0.5kb downstream 4984 true Bd2: 13922258-13927241 Brachypodium distachyon
Bradi2g15740 0.5kb downstream 0.5kb downstream 500 false Bd2: 13926742-13927241 Brachypodium distachyon
Bradi2g15740 1.0kb upstream 1.0kb upstream 5484 true Bd2: 13921258-13926741 Brachypodium distachyon
Bradi2g15740 1.0kb upstream 1.0kb upstream 1000 false Bd2: 13921258-13922257 Brachypodium distachyon
Bradi2g15740 1.0kb downstream 1.0kb downstream 5484 true Bd2: 13922258-13927741 Brachypodium distachyon
Bradi2g15740 1.0kb downstream 1.0kb downstream 1000 false Bd2: 13926742-13927741 Brachypodium distachyon
Bradi2g15740 2.0kb upstream 2.0kb upstream 6484 true Bd2: 13920258-13926741 Brachypodium distachyon
Bradi2g15740 2.0kb upstream 2.0kb upstream 2000 false Bd2: 13920258-13922257 Brachypodium distachyon
Bradi2g15740 2.0kb downstream 2.0kb downstream 6484 true Bd2: 13922258-13928741 Brachypodium distachyon
Bradi2g15740 2.0kb downstream 2.0kb downstream 2000 false Bd2: 13926742-13928741 Brachypodium distachyon
Bradi2g15740 5.0kb upstream 5.0kb upstream 9484 true Bd2: 13917258-13926741 Brachypodium distachyon
Bradi2g15740 5.0kb upstream 5.0kb upstream 5000 false Bd2: 13917258-13922257 Brachypodium distachyon
Bradi2g15740 5.0kb downstream 5.0kb downstream 9484 true Bd2: 13922258-13931741 Brachypodium distachyon
Bradi2g15740 5.0kb downstream 5.0kb downstream 5000 false Bd2: 13926742-13931741 Brachypodium distachyon
Bradi2g15740 10.0kb upstream 10.0kb upstream 14484 true Bd2: 13912258-13926741 Brachypodium distachyon
Bradi2g15740 10.0kb upstream 10.0kb upstream 10000 false Bd2: 13912258-13922257 Brachypodium distachyon
Bradi2g15740 10.0kb downstream 10.0kb downstream 14484 true Bd2: 13922258-13936741 Brachypodium distachyon
Bradi2g15740 10.0kb downstream 10.0kb downstream 10000 false Bd2: 13926742-13936741 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124545033 5269 Grass View MSA
122042635 5273 Angiosperm View MSA
121345492 5274 Embryophyte View MSA
123423974 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 65.753     High High
cufflinks 37.911     High  
cufflinks 42.031     High  
cufflinks 38.74     High  
cufflinks 46.86     High  
cufflinks 36.599     High  
cufflinks 37.133     High  
cufflinks 48.452     High  
cufflinks 35.751     High  
cufflinks 47.71     High  
cufflinks 26.154     High Low
cufflinks 32.884     High  
cufflinks 22.448     High Low
cufflinks 30.592     High Low
cufflinks 45.071     High  
cufflinks 44.207     High  
cufflinks 68.403     High High
cufflinks 65.979     High High
cufflinks 59.604     High High
cufflinks 50.682     High  
cufflinks 59.293     High High
cufflinks 41.755     High  
cufflinks 46.851     High  
cufflinks 42.022     High  
cufflinks 36.407     High  
cufflinks 38.606     High  
cufflinks 32.699     High  
cufflinks 40.275     High  
cufflinks 41.765     High  
cufflinks 47.497     High  

0 Strain