Gene : Bradi4g29300 B. distachyon v3.1
Defline:  (1 of 1) PTHR12297 - HYPOXIA-INDUCBILE GENE 1 HIG1 -RELATED Genomic Order:  3769
Name:  ? Bradi4g29300 Secondary Identifier:  ? PAC:32785638
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi4g29300 0.5kb upstream 0.5kb upstream 3566 true Bd4: 34648897-34652462 Brachypodium distachyon
Bradi4g29300 0.5kb upstream 0.5kb upstream 500 false Bd4: 34648897-34649396 Brachypodium distachyon
Bradi4g29300 0.5kb downstream 0.5kb downstream 3566 true Bd4: 34649397-34652962 Brachypodium distachyon
Bradi4g29300 0.5kb downstream 0.5kb downstream 500 false Bd4: 34652463-34652962 Brachypodium distachyon
Bradi4g29300 1.0kb upstream 1.0kb upstream 4066 true Bd4: 34648397-34652462 Brachypodium distachyon
Bradi4g29300 1.0kb upstream 1.0kb upstream 1000 false Bd4: 34648397-34649396 Brachypodium distachyon
Bradi4g29300 1.0kb downstream 1.0kb downstream 4066 true Bd4: 34649397-34653462 Brachypodium distachyon
Bradi4g29300 1.0kb downstream 1.0kb downstream 1000 false Bd4: 34652463-34653462 Brachypodium distachyon
Bradi4g29300 2.0kb upstream 2.0kb upstream 5066 true Bd4: 34647397-34652462 Brachypodium distachyon
Bradi4g29300 2.0kb upstream 2.0kb upstream 2000 false Bd4: 34647397-34649396 Brachypodium distachyon
Bradi4g29300 2.0kb downstream 2.0kb downstream 5066 true Bd4: 34649397-34654462 Brachypodium distachyon
Bradi4g29300 2.0kb downstream 2.0kb downstream 2000 false Bd4: 34652463-34654462 Brachypodium distachyon
Bradi4g29300 5.0kb upstream 5.0kb upstream 8066 true Bd4: 34644397-34652462 Brachypodium distachyon
Bradi4g29300 5.0kb upstream 5.0kb upstream 5000 false Bd4: 34644397-34649396 Brachypodium distachyon
Bradi4g29300 5.0kb downstream 5.0kb downstream 8066 true Bd4: 34649397-34657462 Brachypodium distachyon
Bradi4g29300 5.0kb downstream 5.0kb downstream 5000 false Bd4: 34652463-34657462 Brachypodium distachyon
Bradi4g29300 10.0kb upstream 10.0kb upstream 13066 true Bd4: 34639397-34652462 Brachypodium distachyon
Bradi4g29300 10.0kb upstream 10.0kb upstream 10000 false Bd4: 34639397-34649396 Brachypodium distachyon
Bradi4g29300 10.0kb downstream 10.0kb downstream 13066 true Bd4: 34649397-34662462 Brachypodium distachyon
Bradi4g29300 10.0kb downstream 10.0kb downstream 10000 false Bd4: 34652463-34662462 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124571605 5269 Grass View MSA
122045148 5273 Angiosperm View MSA
121347874 5274 Embryophyte View MSA
123423754 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.467     High  
cufflinks 8.918        
cufflinks 8.973        
cufflinks 12.887     High  
cufflinks 17.366     High  
cufflinks 8.164       Low
cufflinks 8.696       Low
cufflinks 11.083     High  
cufflinks 8.577       Low
cufflinks 16.065     High  
cufflinks 8.394       Low
cufflinks 9.252     High  
cufflinks 9.566     High  
cufflinks 9.319     High  
cufflinks 20.038     High High
cufflinks 7.535       Low
cufflinks 19.097     High High
cufflinks 8.393       Low
cufflinks 18.514     High High
cufflinks 29.292     High High
cufflinks 23.764     High High
cufflinks 8.719       Low
cufflinks 10.938     High  
cufflinks 9.691     High  
cufflinks 10.264     High  
cufflinks 13.982     High  
cufflinks 7.705       Low
cufflinks 12.987     High  
cufflinks 11.882     High  
cufflinks 13.955     High  

0 Strain