Gene : Bradi4g36570 B. distachyon v3.1
Defline:  (1 of 1) PTHR13208:SF2 - MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 4 Genomic Order:  4701
Name:  ? Bradi4g36570 Secondary Identifier:  ? PAC:32784871
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi4g36570 0.5kb upstream 0.5kb upstream 1751 true Bd4: 41681112-41682862 Brachypodium distachyon
Bradi4g36570 0.5kb upstream 0.5kb upstream 500 false Bd4: 41682363-41682862 Brachypodium distachyon
Bradi4g36570 0.5kb downstream 0.5kb downstream 1751 true Bd4: 41680612-41682362 Brachypodium distachyon
Bradi4g36570 0.5kb downstream 0.5kb downstream 500 false Bd4: 41680612-41681111 Brachypodium distachyon
Bradi4g36570 1.0kb upstream 1.0kb upstream 2251 true Bd4: 41681112-41683362 Brachypodium distachyon
Bradi4g36570 1.0kb upstream 1.0kb upstream 1000 false Bd4: 41682363-41683362 Brachypodium distachyon
Bradi4g36570 1.0kb downstream 1.0kb downstream 2251 true Bd4: 41680112-41682362 Brachypodium distachyon
Bradi4g36570 1.0kb downstream 1.0kb downstream 1000 false Bd4: 41680112-41681111 Brachypodium distachyon
Bradi4g36570 2.0kb upstream 2.0kb upstream 3251 true Bd4: 41681112-41684362 Brachypodium distachyon
Bradi4g36570 2.0kb upstream 2.0kb upstream 2000 false Bd4: 41682363-41684362 Brachypodium distachyon
Bradi4g36570 2.0kb downstream 2.0kb downstream 3251 true Bd4: 41679112-41682362 Brachypodium distachyon
Bradi4g36570 2.0kb downstream 2.0kb downstream 2000 false Bd4: 41679112-41681111 Brachypodium distachyon
Bradi4g36570 5.0kb upstream 5.0kb upstream 6251 true Bd4: 41681112-41687362 Brachypodium distachyon
Bradi4g36570 5.0kb upstream 5.0kb upstream 5000 false Bd4: 41682363-41687362 Brachypodium distachyon
Bradi4g36570 5.0kb downstream 5.0kb downstream 6251 true Bd4: 41676112-41682362 Brachypodium distachyon
Bradi4g36570 5.0kb downstream 5.0kb downstream 5000 false Bd4: 41676112-41681111 Brachypodium distachyon
Bradi4g36570 10.0kb upstream 10.0kb upstream 11251 true Bd4: 41681112-41692362 Brachypodium distachyon
Bradi4g36570 10.0kb upstream 10.0kb upstream 10000 false Bd4: 41682363-41692362 Brachypodium distachyon
Bradi4g36570 10.0kb downstream 10.0kb downstream 11251 true Bd4: 41671112-41682362 Brachypodium distachyon
Bradi4g36570 10.0kb downstream 10.0kb downstream 10000 false Bd4: 41671112-41681111 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124568797 5269 Grass View MSA
122042269 5273 Angiosperm View MSA
121345208 5274 Embryophyte View MSA
123380175 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.703       Low
cufflinks 15.134     High  
cufflinks 16.799     High  
cufflinks 12.478     High  
cufflinks 7.339       Low
cufflinks 13.514     High  
cufflinks 15.258     High  
cufflinks 13.784     High  
cufflinks 13.845     High  
cufflinks 11.268     High  
cufflinks 12.747     High  
cufflinks 11.356     High  
cufflinks 9.455     High  
cufflinks 10.079     High  
cufflinks 6.875       Low
cufflinks 15.89     High  
cufflinks 11.041     High  
cufflinks 21.82     High High
cufflinks 9.682        
cufflinks 5.99       Low
cufflinks 19.094     High High
cufflinks 15.016     High  
cufflinks 12.642     High  
cufflinks 11.928     High  
cufflinks 13.384     High  
cufflinks 14.316     High  
cufflinks 13.617     High  
cufflinks 15.546     High  
cufflinks 14.043     High  
cufflinks 17.15     High  

0 Strain