Gene : Bradi2g26700 B. distachyon v3.1
Defline:  (1 of 1) PTHR12121//PTHR12121:SF42 - CARBON CATABOLITE REPRESSOR PROTEIN 4 // CARBON CATABOLITE REPRESSOR PROTEIN 4 HOMOLOG 4-RELATED Genomic Order:  3420
Name:  ? Bradi2g26700 Secondary Identifier:  ? PAC:32782171
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g26700 0.5kb upstream 0.5kb upstream 10019 true Bd2: 25441038-25451056 Brachypodium distachyon
Bradi2g26700 0.5kb upstream 0.5kb upstream 500 false Bd2: 25441038-25441537 Brachypodium distachyon
Bradi2g26700 0.5kb downstream 0.5kb downstream 10019 true Bd2: 25441538-25451556 Brachypodium distachyon
Bradi2g26700 0.5kb downstream 0.5kb downstream 500 false Bd2: 25451057-25451556 Brachypodium distachyon
Bradi2g26700 1.0kb upstream 1.0kb upstream 10519 true Bd2: 25440538-25451056 Brachypodium distachyon
Bradi2g26700 1.0kb upstream 1.0kb upstream 1000 false Bd2: 25440538-25441537 Brachypodium distachyon
Bradi2g26700 1.0kb downstream 1.0kb downstream 10519 true Bd2: 25441538-25452056 Brachypodium distachyon
Bradi2g26700 1.0kb downstream 1.0kb downstream 1000 false Bd2: 25451057-25452056 Brachypodium distachyon
Bradi2g26700 2.0kb upstream 2.0kb upstream 11519 true Bd2: 25439538-25451056 Brachypodium distachyon
Bradi2g26700 2.0kb upstream 2.0kb upstream 2000 false Bd2: 25439538-25441537 Brachypodium distachyon
Bradi2g26700 2.0kb downstream 2.0kb downstream 11519 true Bd2: 25441538-25453056 Brachypodium distachyon
Bradi2g26700 2.0kb downstream 2.0kb downstream 2000 false Bd2: 25451057-25453056 Brachypodium distachyon
Bradi2g26700 5.0kb upstream 5.0kb upstream 14519 true Bd2: 25436538-25451056 Brachypodium distachyon
Bradi2g26700 5.0kb upstream 5.0kb upstream 5000 false Bd2: 25436538-25441537 Brachypodium distachyon
Bradi2g26700 5.0kb downstream 5.0kb downstream 14519 true Bd2: 25441538-25456056 Brachypodium distachyon
Bradi2g26700 5.0kb downstream 5.0kb downstream 5000 false Bd2: 25451057-25456056 Brachypodium distachyon
Bradi2g26700 10.0kb upstream 10.0kb upstream 19519 true Bd2: 25431538-25451056 Brachypodium distachyon
Bradi2g26700 10.0kb upstream 10.0kb upstream 10000 false Bd2: 25431538-25441537 Brachypodium distachyon
Bradi2g26700 10.0kb downstream 10.0kb downstream 19519 true Bd2: 25441538-25461056 Brachypodium distachyon
Bradi2g26700 10.0kb downstream 10.0kb downstream 10000 false Bd2: 25451057-25461056 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124582143 5269 Grass View MSA
122047277 5273 Angiosperm View MSA
121350616 5274 Embryophyte View MSA
123428031 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.506        
cufflinks 3.553        
cufflinks 3.328        
cufflinks 3.01        
cufflinks 2.063        
cufflinks 2.96        
cufflinks 2.947        
cufflinks 3.68       High
cufflinks 3.166        
cufflinks 3.207        
cufflinks 1.945        
cufflinks 2.839        
cufflinks 1.27       Low
cufflinks 1.463       Low
cufflinks 1.949        
cufflinks 3.427        
cufflinks 3.072        
cufflinks 3.627        
cufflinks 2.613        
cufflinks 0.743       Low
cufflinks 1.802        
cufflinks 4.22       High
cufflinks 3.209        
cufflinks 2.746        
cufflinks 2.766        
cufflinks 3.156        
cufflinks 1.699        
cufflinks 3.269        
cufflinks 3.443        
cufflinks 3.059        

0 Strain